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Mutant Information

Mutant Name	FN3252-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3252-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7077286 A-G Homo INTERGENIC
SBS Chr1 7992951 T-A Homo INTRON
SBS Chr1 17897772 A-C Hetero INTERGENIC
SBS Chr1 25030404 T-A Hetero UTR_5_PRIME
SBS Chr1 34328133 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 37275142 C-T Hetero INTERGENIC
SBS Chr2 6693522 C-T Hetero INTERGENIC
SBS Chr2 26831401 G-A Hetero INTERGENIC
SBS Chr2 33099202 G-T Hetero INTERGENIC
SBS Chr3 7245847 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 17561403 G-T Homo INTERGENIC
SBS Chr3 29160571 C-A Hetero INTERGENIC
SBS Chr3 37288898 G-C Hetero INTRON
SBS Chr4 8884015 G-C Hetero INTERGENIC
SBS Chr4 18361472 C-T Homo INTERGENIC
SBS Chr4 29370174 A-G Hetero INTERGENIC
SBS Chr4 34489216 T-C Hetero INTERGENIC
SBS Chr5 1122423 G-A Homo INTERGENIC
SBS Chr5 2193123 G-A Homo INTERGENIC
SBS Chr6 245547 T-A Homo INTERGENIC
SBS Chr7 203709 T-A Hetero INTRON
SBS Chr7 4774541 A-G Homo INTERGENIC
SBS Chr7 19520336 T-C Hetero SYNONYMOUS_CODING
SBS Chr7 21637079 G-A Hetero INTERGENIC
SBS Chr7 22116750 T-A Homo INTERGENIC
SBS Chr7 29548305 C-T Hetero INTERGENIC
SBS Chr8 2937237 A-C Hetero INTRON
SBS Chr8 8990916 G-T Hetero INTERGENIC
SBS Chr9 4761932 G-T Homo INTERGENIC
SBS Chr10 2079525 T-A Homo INTERGENIC
SBS Chr10 18052595 T-A Hetero INTERGENIC
SBS Chr11 23625036 C-A Hetero INTERGENIC
SBS Chr12 12569038 G-A Hetero INTERGENIC
SBS Chr12 13026021 C-T Hetero INTERGENIC
SBS Chr12 17475812 G-A Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1927920 1927923 3
Deletion Chr6 3195214 3195218 4
Deletion Chr11 3703026 3703033 7
Deletion Chr10 4135505 4135517 12
Deletion Chr3 5741058 5741059 1
Deletion Chr12 5905110 5905111 1
Deletion Chr6 6003001 6124000 120999 22
Deletion Chr3 6208228 6208235 7
Deletion Chr6 6499010 6499043 33
Deletion Chr8 13972941 13972946 5
Deletion Chr9 17123676 17123683 7 OsKitaake09g127400
Deletion Chr5 17947913 17947915 2
Deletion Chr8 19292575 19292600 25
Deletion Chr12 19926246 19926280 34
Deletion Chr11 20122214 20122215 1
Deletion Chr3 21668317 21668324 7
Deletion Chr2 26910130 26910151 21
Deletion Chr7 28577001 28895000 317999 40
Deletion Chr6 29081347 29081350 3
Deletion Chr4 30355850 30355860 10
Deletion Chr1 31211352 31211363 11 OsKitaake01g312200

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43984325 43984328 2
Insertion Chr7 7057848 7057851 2
Insertion Chr8 3123682 3123685 2
Insertion Chr9 3057509 3057512 2
Insertion Chr10 19774670 19774673 2
Insertion Chr11 20095979 20095982 2
Insertion Chr8 650878 650882 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 18356230 19119445 2
Inversion Chr10 18356232 19119446 2
Inversion Chr7 28193360 28579859 OsKitaake07g266000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 15510766 Chr3 28349642 OsKitaake03g293200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7077286	A-G	Homo	INTERGENIC
SBS	Chr1	7992951	T-A	Homo	INTRON
SBS	Chr1	17897772	A-C	Hetero	INTERGENIC
SBS	Chr1	25030404	T-A	Hetero	UTR_5_PRIME
SBS	Chr1	34328133	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	37275142	C-T	Hetero	INTERGENIC
SBS	Chr2	6693522	C-T	Hetero	INTERGENIC
SBS	Chr2	26831401	G-A	Hetero	INTERGENIC
SBS	Chr2	33099202	G-T	Hetero	INTERGENIC
SBS	Chr3	7245847	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	17561403	G-T	Homo	INTERGENIC
SBS	Chr3	29160571	C-A	Hetero	INTERGENIC
SBS	Chr3	37288898	G-C	Hetero	INTRON
SBS	Chr4	8884015	G-C	Hetero	INTERGENIC
SBS	Chr4	18361472	C-T	Homo	INTERGENIC
SBS	Chr4	29370174	A-G	Hetero	INTERGENIC
SBS	Chr4	34489216	T-C	Hetero	INTERGENIC
SBS	Chr5	1122423	G-A	Homo	INTERGENIC
SBS	Chr5	2193123	G-A	Homo	INTERGENIC
SBS	Chr6	245547	T-A	Homo	INTERGENIC
SBS	Chr7	203709	T-A	Hetero	INTRON
SBS	Chr7	4774541	A-G	Homo	INTERGENIC
SBS	Chr7	19520336	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	21637079	G-A	Hetero	INTERGENIC
SBS	Chr7	22116750	T-A	Homo	INTERGENIC
SBS	Chr7	29548305	C-T	Hetero	INTERGENIC
SBS	Chr8	2937237	A-C	Hetero	INTRON
SBS	Chr8	8990916	G-T	Hetero	INTERGENIC
SBS	Chr9	4761932	G-T	Homo	INTERGENIC
SBS	Chr10	2079525	T-A	Homo	INTERGENIC
SBS	Chr10	18052595	T-A	Hetero	INTERGENIC
SBS	Chr11	23625036	C-A	Hetero	INTERGENIC
SBS	Chr12	12569038	G-A	Hetero	INTERGENIC
SBS	Chr12	13026021	C-T	Hetero	INTERGENIC
SBS	Chr12	17475812	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1927920	1927923	3
Deletion	Chr6	3195214	3195218	4
Deletion	Chr11	3703026	3703033	7
Deletion	Chr10	4135505	4135517	12
Deletion	Chr3	5741058	5741059	1
Deletion	Chr12	5905110	5905111	1
Deletion	Chr6	6003001	6124000	120999	22
Deletion	Chr3	6208228	6208235	7
Deletion	Chr6	6499010	6499043	33
Deletion	Chr8	13972941	13972946	5
Deletion	Chr9	17123676	17123683	7	OsKitaake09g127400
Deletion	Chr5	17947913	17947915	2
Deletion	Chr8	19292575	19292600	25
Deletion	Chr12	19926246	19926280	34
Deletion	Chr11	20122214	20122215	1
Deletion	Chr3	21668317	21668324	7
Deletion	Chr2	26910130	26910151	21
Deletion	Chr7	28577001	28895000	317999	40
Deletion	Chr6	29081347	29081350	3
Deletion	Chr4	30355850	30355860	10
Deletion	Chr1	31211352	31211363	11	OsKitaake01g312200

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	18356230	19119445	2
Inversion	Chr10	18356232	19119446	2
Inversion	Chr7	28193360	28579859	OsKitaake07g266000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes