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Mutant Information

Mutant Name	FN3253-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3253-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16612491 T-C Hetero INTERGENIC
SBS Chr1 27286162 G-A Homo INTERGENIC
SBS Chr1 35698578 C-A Hetero INTERGENIC
SBS Chr1 42373211 G-A Hetero INTERGENIC
SBS Chr2 13559529 G-A Homo INTERGENIC
SBS Chr2 31016798 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g316800
SBS Chr2 33593311 C-T Hetero INTERGENIC
SBS Chr2 36958223 C-G Hetero INTERGENIC
SBS Chr3 22115646 T-G Hetero INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 11203657 T-G Hetero INTERGENIC
SBS Chr4 14561791 A-G Homo INTERGENIC
SBS Chr4 33561915 T-A Hetero INTERGENIC
SBS Chr5 12300266 C-A Homo INTERGENIC
SBS Chr6 2948290 A-C Homo INTERGENIC
SBS Chr6 13152299 C-T Hetero INTERGENIC
SBS Chr6 16111378 C-A Homo INTERGENIC
SBS Chr6 28310672 T-A Hetero INTERGENIC
SBS Chr7 23703073 A-G Hetero INTERGENIC
SBS Chr7 24210098 A-T Hetero INTERGENIC
SBS Chr7 26245499 G-A Hetero INTERGENIC
SBS Chr9 3552978 A-G Homo INTERGENIC
SBS Chr9 8304961 A-G Hetero INTERGENIC
SBS Chr9 9391975 G-T Hetero INTERGENIC
SBS Chr9 12759901 C-T Hetero INTERGENIC
SBS Chr9 20435752 G-A Hetero INTRON
SBS Chr11 2039643 A-T Homo INTRON
SBS Chr11 15745011 T-A Hetero INTERGENIC
SBS Chr11 17242585 C-T Hetero INTERGENIC
SBS Chr11 20574338 T-G Hetero INTERGENIC
SBS Chr11 22803184 C-T Hetero INTERGENIC
SBS Chr11 27558134 G-A Hetero INTERGENIC
SBS Chr12 4815461 A-T Homo INTERGENIC
SBS Chr12 13518846 A-C Hetero INTERGENIC
SBS Chr12 20729090 T-C Hetero INTRON
SBS Chr12 23627389 G-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 201379 201391 12
Deletion Chr6 1659178 1659188 10
Deletion Chr10 2158498 2158501 3
Deletion Chr12 4233497 4233498 1
Deletion Chr1 6373327 6373346 19
Deletion Chr7 7065400 7065413 13
Deletion Chr3 10836922 10836923 1
Deletion Chr3 10974415 10974416 1
Deletion Chr1 14542416 14542426 10
Deletion Chr10 14622351 14622371 20
Deletion Chr6 15649286 15649287 1
Deletion Chr4 17069847 17069849 2
Deletion Chr9 17290584 17290597 13
Deletion Chr8 17648887 17648895 8
Deletion Chr8 18470001 18480000 9999 OsKitaake08g137500
Deletion Chr10 19483259 19483264 5
Deletion Chr3 20493067 20493073 6
Deletion Chr11 22168421 22168424 3
Deletion Chr11 22672867 22672884 17
Deletion Chr7 23132304 23132305 1
Deletion Chr7 25315870 25315888 18
Deletion Chr8 25603684 25603686 2
Deletion Chr8 25847631 25847632 1
Deletion Chr1 27542639 27542651 12

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 469848 469851 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 15154711 Chr3 8471271 OsKitaake03g116100
Translocation Chr9 15155946 Chr3 8471259 OsKitaake03g116100
Translocation Chr9 15229827 Chr4 35077860
Translocation Chr9 15230180 Chr4 35077860

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16612491	T-C	Hetero	INTERGENIC
SBS	Chr1	27286162	G-A	Homo	INTERGENIC
SBS	Chr1	35698578	C-A	Hetero	INTERGENIC
SBS	Chr1	42373211	G-A	Hetero	INTERGENIC
SBS	Chr2	13559529	G-A	Homo	INTERGENIC
SBS	Chr2	31016798	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g316800
SBS	Chr2	33593311	C-T	Hetero	INTERGENIC
SBS	Chr2	36958223	C-G	Hetero	INTERGENIC
SBS	Chr3	22115646	T-G	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	11203657	T-G	Hetero	INTERGENIC
SBS	Chr4	14561791	A-G	Homo	INTERGENIC
SBS	Chr4	33561915	T-A	Hetero	INTERGENIC
SBS	Chr5	12300266	C-A	Homo	INTERGENIC
SBS	Chr6	2948290	A-C	Homo	INTERGENIC
SBS	Chr6	13152299	C-T	Hetero	INTERGENIC
SBS	Chr6	16111378	C-A	Homo	INTERGENIC
SBS	Chr6	28310672	T-A	Hetero	INTERGENIC
SBS	Chr7	23703073	A-G	Hetero	INTERGENIC
SBS	Chr7	24210098	A-T	Hetero	INTERGENIC
SBS	Chr7	26245499	G-A	Hetero	INTERGENIC
SBS	Chr9	3552978	A-G	Homo	INTERGENIC
SBS	Chr9	8304961	A-G	Hetero	INTERGENIC
SBS	Chr9	9391975	G-T	Hetero	INTERGENIC
SBS	Chr9	12759901	C-T	Hetero	INTERGENIC
SBS	Chr9	20435752	G-A	Hetero	INTRON
SBS	Chr11	2039643	A-T	Homo	INTRON
SBS	Chr11	15745011	T-A	Hetero	INTERGENIC
SBS	Chr11	17242585	C-T	Hetero	INTERGENIC
SBS	Chr11	20574338	T-G	Hetero	INTERGENIC
SBS	Chr11	22803184	C-T	Hetero	INTERGENIC
SBS	Chr11	27558134	G-A	Hetero	INTERGENIC
SBS	Chr12	4815461	A-T	Homo	INTERGENIC
SBS	Chr12	13518846	A-C	Hetero	INTERGENIC
SBS	Chr12	20729090	T-C	Hetero	INTRON
SBS	Chr12	23627389	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	201379	201391	12
Deletion	Chr6	1659178	1659188	10
Deletion	Chr10	2158498	2158501	3
Deletion	Chr12	4233497	4233498	1
Deletion	Chr1	6373327	6373346	19
Deletion	Chr7	7065400	7065413	13
Deletion	Chr3	10836922	10836923	1
Deletion	Chr3	10974415	10974416	1
Deletion	Chr1	14542416	14542426	10
Deletion	Chr10	14622351	14622371	20
Deletion	Chr6	15649286	15649287	1
Deletion	Chr4	17069847	17069849	2
Deletion	Chr9	17290584	17290597	13
Deletion	Chr8	17648887	17648895	8
Deletion	Chr8	18470001	18480000	9999	OsKitaake08g137500
Deletion	Chr10	19483259	19483264	5
Deletion	Chr3	20493067	20493073	6
Deletion	Chr11	22168421	22168424	3
Deletion	Chr11	22672867	22672884	17
Deletion	Chr7	23132304	23132305	1
Deletion	Chr7	25315870	25315888	18
Deletion	Chr8	25603684	25603686	2
Deletion	Chr8	25847631	25847632	1
Deletion	Chr1	27542639	27542651	12

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	15154711	Chr3	8471271	OsKitaake03g116100
Translocation	Chr9	15155946	Chr3	8471259	OsKitaake03g116100
Translocation	Chr9	15229827	Chr4	35077860
Translocation	Chr9	15230180	Chr4	35077860

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes