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Mutant Information

Mutant Name	FN3254-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3254-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2225719 C-T Hetero INTERGENIC
SBS Chr1 13160759 G-A Hetero INTERGENIC
SBS Chr1 29780145 G-A Homo UTR_3_PRIME
SBS Chr1 34951430 C-T Hetero INTERGENIC
SBS Chr1 40823040 A-T Homo INTRON
SBS Chr2 4033708 T-A Homo INTERGENIC
SBS Chr2 6287845 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr3 2108854 T-G Hetero INTERGENIC
SBS Chr3 10844770 A-G Hetero INTERGENIC
SBS Chr4 16332810 G-A Homo INTERGENIC
SBS Chr4 16519997 C-T Hetero INTERGENIC
SBS Chr4 24623002 G-A Homo INTERGENIC
SBS Chr6 1364952 G-A Hetero INTERGENIC
SBS Chr6 13416288 T-C Homo INTRON
SBS Chr6 24365302 G-C Hetero INTERGENIC
SBS Chr7 9522037 C-T Homo INTERGENIC
SBS Chr7 24486090 T-C Homo INTERGENIC
SBS Chr7 26289285 A-T Homo UTR_5_PRIME
SBS Chr8 1007651 C-T Hetero INTERGENIC
SBS Chr8 17080015 A-G Hetero INTRON
SBS Chr9 21073017 C-G Homo NON_SYNONYMOUS_CODING OsKitaake09g181400
SBS Chr10 4454451 A-T Hetero INTERGENIC
SBS Chr10 5860911 T-C Hetero INTERGENIC
SBS Chr10 6864639 C-A Hetero INTERGENIC
SBS Chr10 10876805 C-T Hetero INTERGENIC
SBS Chr11 13400965 A-T Hetero INTERGENIC
SBS Chr11 24370665 G-A Hetero INTERGENIC
SBS Chr12 9686066 G-A Hetero INTERGENIC
SBS Chr12 15415037 A-G Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3264185 3264201 16
Deletion Chr2 3778480 3778484 4 OsKitaake02g054500
Deletion Chr7 6126735 6126741 6
Deletion Chr5 7150038 7150040 2
Deletion Chr4 7521603 7521604 1
Deletion Chr10 8408195 8408196 1
Deletion Chr11 11387351 11387352 1
Deletion Chr5 11644585 11644586 1
Deletion Chr5 12171634 12171641 7
Deletion Chr11 13034001 13058000 23999
Deletion Chr4 13809404 13809408 4
Deletion Chr9 17395001 17428000 32999 4
Deletion Chr7 20425318 20425320 2
Deletion Chr7 20581453 20581474 21
Deletion Chr6 21548744 21548751 7
Deletion Chr1 21550581 21550585 4
Deletion Chr6 23282359 23282365 6
Deletion Chr1 24782256 24782258 2 OsKitaake01g239200
Deletion Chr1 26741131 26741140 9 OsKitaake01g259800
Deletion Chr11 27323839 27323841 2
Deletion Chr3 32207957 32207958 1
Deletion Chr2 33303606 33303607 1
Deletion Chr3 36399466 36399478 12

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32383879 32383883 3
Insertion Chr11 25150434 25150437 2
Insertion Chr12 22626453 22626456 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 5182064 6094484 OsKitaake12g065600
Inversion Chr12 5182074 5639034 OsKitaake12g065600
Inversion Chr3 15590695 15681927 OsKitaake03g201300

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 14853280 Chr8 22607772 OsKitaake08g173400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2225719	C-T	Hetero	INTERGENIC
SBS	Chr1	13160759	G-A	Hetero	INTERGENIC
SBS	Chr1	29780145	G-A	Homo	UTR_3_PRIME
SBS	Chr1	34951430	C-T	Hetero	INTERGENIC
SBS	Chr1	40823040	A-T	Homo	INTRON
SBS	Chr2	4033708	T-A	Homo	INTERGENIC
SBS	Chr2	6287845	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr3	2108854	T-G	Hetero	INTERGENIC
SBS	Chr3	10844770	A-G	Hetero	INTERGENIC
SBS	Chr4	16332810	G-A	Homo	INTERGENIC
SBS	Chr4	16519997	C-T	Hetero	INTERGENIC
SBS	Chr4	24623002	G-A	Homo	INTERGENIC
SBS	Chr6	1364952	G-A	Hetero	INTERGENIC
SBS	Chr6	13416288	T-C	Homo	INTRON
SBS	Chr6	24365302	G-C	Hetero	INTERGENIC
SBS	Chr7	9522037	C-T	Homo	INTERGENIC
SBS	Chr7	24486090	T-C	Homo	INTERGENIC
SBS	Chr7	26289285	A-T	Homo	UTR_5_PRIME
SBS	Chr8	1007651	C-T	Hetero	INTERGENIC
SBS	Chr8	17080015	A-G	Hetero	INTRON
SBS	Chr9	21073017	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g181400
SBS	Chr10	4454451	A-T	Hetero	INTERGENIC
SBS	Chr10	5860911	T-C	Hetero	INTERGENIC
SBS	Chr10	6864639	C-A	Hetero	INTERGENIC
SBS	Chr10	10876805	C-T	Hetero	INTERGENIC
SBS	Chr11	13400965	A-T	Hetero	INTERGENIC
SBS	Chr11	24370665	G-A	Hetero	INTERGENIC
SBS	Chr12	9686066	G-A	Hetero	INTERGENIC
SBS	Chr12	15415037	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3264185	3264201	16
Deletion	Chr2	3778480	3778484	4	OsKitaake02g054500
Deletion	Chr7	6126735	6126741	6
Deletion	Chr5	7150038	7150040	2
Deletion	Chr4	7521603	7521604	1
Deletion	Chr10	8408195	8408196	1
Deletion	Chr11	11387351	11387352	1
Deletion	Chr5	11644585	11644586	1
Deletion	Chr5	12171634	12171641	7
Deletion	Chr11	13034001	13058000	23999
Deletion	Chr4	13809404	13809408	4
Deletion	Chr9	17395001	17428000	32999	4
Deletion	Chr7	20425318	20425320	2
Deletion	Chr7	20581453	20581474	21
Deletion	Chr6	21548744	21548751	7
Deletion	Chr1	21550581	21550585	4
Deletion	Chr6	23282359	23282365	6
Deletion	Chr1	24782256	24782258	2	OsKitaake01g239200
Deletion	Chr1	26741131	26741140	9	OsKitaake01g259800
Deletion	Chr11	27323839	27323841	2
Deletion	Chr3	32207957	32207958	1
Deletion	Chr2	33303606	33303607	1
Deletion	Chr3	36399466	36399478	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5182064	6094484	OsKitaake12g065600
Inversion	Chr12	5182074	5639034	OsKitaake12g065600
Inversion	Chr3	15590695	15681927	OsKitaake03g201300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes