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Mutant Information

Mutant Name	FN3255-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3255-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 76

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8104507 G-A Hetero INTERGENIC
SBS Chr1 14520224 T-G Homo INTERGENIC
SBS Chr1 30348587 G-T Hetero INTERGENIC
SBS Chr1 40367406 C-T Hetero INTERGENIC
SBS Chr2 5961627 T-A Hetero INTERGENIC
SBS Chr2 8829658 G-A Homo INTERGENIC
SBS Chr2 10636440 C-A Hetero STOP_GAINED OsKitaake02g125700
SBS Chr2 10690414 G-T Hetero INTERGENIC
SBS Chr2 11570039 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g133700
SBS Chr2 14253276 G-A Hetero INTERGENIC
SBS Chr2 18667937 T-A Hetero INTERGENIC
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr2 21115358 G-A Hetero INTERGENIC
SBS Chr2 30879906 A-T Hetero INTERGENIC
SBS Chr2 34782465 G-A Hetero INTERGENIC
SBS Chr2 34782466 C-A Hetero INTERGENIC
SBS Chr3 12517993 G-A Hetero INTRON
SBS Chr3 23776276 G-A Hetero INTERGENIC
SBS Chr3 32611650 G-T Hetero UTR_3_PRIME
SBS Chr3 35848893 C-A Hetero UTR_3_PRIME
SBS Chr3 36823153 A-G Hetero INTRON
SBS Chr4 5545275 C-A Hetero INTERGENIC
SBS Chr4 10909849 C-A Hetero INTERGENIC
SBS Chr4 13760018 C-G Hetero INTERGENIC
SBS Chr4 14110060 C-T Hetero INTERGENIC
SBS Chr4 26999140 C-A Hetero INTERGENIC
SBS Chr4 28961546 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 31261705 C-T Hetero INTERGENIC
SBS Chr4 33210397 C-T Hetero INTERGENIC
SBS Chr4 33683497 C-T Hetero INTERGENIC
SBS Chr4 34296817 G-T Hetero INTERGENIC
SBS Chr4 34335158 C-T Hetero INTERGENIC
SBS Chr4 34433949 C-A Hetero INTERGENIC
SBS Chr5 592458 G-A Homo INTERGENIC
SBS Chr5 7920646 G-A Hetero INTERGENIC
SBS Chr5 12018660 G-A Homo INTERGENIC
SBS Chr6 674810 T-C Hetero UTR_5_PRIME
SBS Chr6 1007846 C-G Hetero INTERGENIC
SBS Chr6 2981926 C-T Homo INTERGENIC
SBS Chr6 8943412 T-C Hetero INTERGENIC
SBS Chr6 13015086 A-G Hetero INTRON
SBS Chr6 14449220 T-A Hetero INTERGENIC
SBS Chr6 14792435 G-A Hetero INTERGENIC
SBS Chr6 18789782 G-A Hetero INTRON
SBS Chr6 22570102 G-A Hetero INTERGENIC
SBS Chr6 25035078 A-G Homo INTERGENIC
SBS Chr7 3277459 A-T Hetero INTERGENIC
SBS Chr7 9898538 C-T Hetero INTERGENIC
SBS Chr7 11439964 G-A Homo INTERGENIC
SBS Chr7 11873731 G-A Hetero INTERGENIC
SBS Chr7 15811558 G-A Hetero INTERGENIC
SBS Chr7 21031582 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g173550
SBS Chr7 29002245 G-A Hetero INTERGENIC
SBS Chr8 4016742 A-G Hetero INTRON
SBS Chr8 14856395 C-T Hetero INTERGENIC
SBS Chr9 4582735 G-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Homo INTERGENIC
SBS Chr10 587443 C-T Hetero INTERGENIC
SBS Chr10 1184169 C-T Homo INTERGENIC
SBS Chr10 5361950 C-A Homo INTERGENIC
SBS Chr10 8637642 C-A Homo INTERGENIC
SBS Chr10 9626760 A-C Hetero INTRON
SBS Chr10 12971397 G-T Homo INTERGENIC
SBS Chr10 13083028 G-C Hetero INTERGENIC
SBS Chr10 15334823 C-T Hetero INTERGENIC
SBS Chr11 7296057 G-A Hetero INTERGENIC
SBS Chr11 10823087 C-T Hetero INTERGENIC
SBS Chr11 11464176 G-A Hetero INTERGENIC
SBS Chr11 12085928 G-A Hetero INTERGENIC
SBS Chr11 16237882 A-G Hetero INTERGENIC
SBS Chr11 22177044 C-T Hetero INTERGENIC
SBS Chr11 24476145 T-A Hetero INTRON
SBS Chr11 25833857 G-A Hetero INTERGENIC
SBS Chr12 9205270 G-A Hetero INTERGENIC
SBS Chr12 10684983 A-G Hetero INTERGENIC
SBS Chr12 21357335 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 503126 503132 6
Deletion Chr11 1151638 1151673 35
Deletion Chr6 2304993 2305025 32
Deletion Chr8 12245496 12245498 2
Deletion Chr3 12436777 12436779 2
Deletion Chr7 14041001 14060000 18999
Deletion Chr5 16488499 16488500 1
Deletion Chr2 17337001 17353000 15999 2
Deletion Chr5 18537468 18537477 9 OsKitaake05g144800
Deletion Chr2 20334696 20334697 1
Deletion Chr12 26130530 26130532 2
Deletion Chr3 26898319 26898321 2
Deletion Chr4 28177150 28177154 4
Deletion Chr11 29035001 29046000 10999 2
Deletion Chr11 29103600 29103602 2
Deletion Chr2 30541149 30541150 1 OsKitaake02g311800
Deletion Chr1 36615423 36615429 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 15050695 15050699 3
Insertion Chr8 615099 615102 2
Insertion Chr11 23429880 23429882 1
Insertion Chr1 6413509 6413512 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 1771497 1902836 2
Inversion Chr5 1772276 1926912 OsKitaake05g020600
Inversion Chr11 24465703 24623502 OsKitaake11g199101
Inversion Chr11 24465731 24623508 OsKitaake11g199101
Inversion Chr4 36449903 36745316
Inversion Chr4 36449912 36745322

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8104507	G-A	Hetero	INTERGENIC
SBS	Chr1	14520224	T-G	Homo	INTERGENIC
SBS	Chr1	30348587	G-T	Hetero	INTERGENIC
SBS	Chr1	40367406	C-T	Hetero	INTERGENIC
SBS	Chr2	5961627	T-A	Hetero	INTERGENIC
SBS	Chr2	8829658	G-A	Homo	INTERGENIC
SBS	Chr2	10636440	C-A	Hetero	STOP_GAINED	OsKitaake02g125700
SBS	Chr2	10690414	G-T	Hetero	INTERGENIC
SBS	Chr2	11570039	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g133700
SBS	Chr2	14253276	G-A	Hetero	INTERGENIC
SBS	Chr2	18667937	T-A	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr2	21115358	G-A	Hetero	INTERGENIC
SBS	Chr2	30879906	A-T	Hetero	INTERGENIC
SBS	Chr2	34782465	G-A	Hetero	INTERGENIC
SBS	Chr2	34782466	C-A	Hetero	INTERGENIC
SBS	Chr3	12517993	G-A	Hetero	INTRON
SBS	Chr3	23776276	G-A	Hetero	INTERGENIC
SBS	Chr3	32611650	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	35848893	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	36823153	A-G	Hetero	INTRON
SBS	Chr4	5545275	C-A	Hetero	INTERGENIC
SBS	Chr4	10909849	C-A	Hetero	INTERGENIC
SBS	Chr4	13760018	C-G	Hetero	INTERGENIC
SBS	Chr4	14110060	C-T	Hetero	INTERGENIC
SBS	Chr4	26999140	C-A	Hetero	INTERGENIC
SBS	Chr4	28961546	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31261705	C-T	Hetero	INTERGENIC
SBS	Chr4	33210397	C-T	Hetero	INTERGENIC
SBS	Chr4	33683497	C-T	Hetero	INTERGENIC
SBS	Chr4	34296817	G-T	Hetero	INTERGENIC
SBS	Chr4	34335158	C-T	Hetero	INTERGENIC
SBS	Chr4	34433949	C-A	Hetero	INTERGENIC
SBS	Chr5	592458	G-A	Homo	INTERGENIC
SBS	Chr5	7920646	G-A	Hetero	INTERGENIC
SBS	Chr5	12018660	G-A	Homo	INTERGENIC
SBS	Chr6	674810	T-C	Hetero	UTR_5_PRIME
SBS	Chr6	1007846	C-G	Hetero	INTERGENIC
SBS	Chr6	2981926	C-T	Homo	INTERGENIC
SBS	Chr6	8943412	T-C	Hetero	INTERGENIC
SBS	Chr6	13015086	A-G	Hetero	INTRON
SBS	Chr6	14449220	T-A	Hetero	INTERGENIC
SBS	Chr6	14792435	G-A	Hetero	INTERGENIC
SBS	Chr6	18789782	G-A	Hetero	INTRON
SBS	Chr6	22570102	G-A	Hetero	INTERGENIC
SBS	Chr6	25035078	A-G	Homo	INTERGENIC
SBS	Chr7	3277459	A-T	Hetero	INTERGENIC
SBS	Chr7	9898538	C-T	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Homo	INTERGENIC
SBS	Chr7	11873731	G-A	Hetero	INTERGENIC
SBS	Chr7	15811558	G-A	Hetero	INTERGENIC
SBS	Chr7	21031582	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g173550
SBS	Chr7	29002245	G-A	Hetero	INTERGENIC
SBS	Chr8	4016742	A-G	Hetero	INTRON
SBS	Chr8	14856395	C-T	Hetero	INTERGENIC
SBS	Chr9	4582735	G-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Homo	INTERGENIC
SBS	Chr10	587443	C-T	Hetero	INTERGENIC
SBS	Chr10	1184169	C-T	Homo	INTERGENIC
SBS	Chr10	5361950	C-A	Homo	INTERGENIC
SBS	Chr10	8637642	C-A	Homo	INTERGENIC
SBS	Chr10	9626760	A-C	Hetero	INTRON
SBS	Chr10	12971397	G-T	Homo	INTERGENIC
SBS	Chr10	13083028	G-C	Hetero	INTERGENIC
SBS	Chr10	15334823	C-T	Hetero	INTERGENIC
SBS	Chr11	7296057	G-A	Hetero	INTERGENIC
SBS	Chr11	10823087	C-T	Hetero	INTERGENIC
SBS	Chr11	11464176	G-A	Hetero	INTERGENIC
SBS	Chr11	12085928	G-A	Hetero	INTERGENIC
SBS	Chr11	16237882	A-G	Hetero	INTERGENIC
SBS	Chr11	22177044	C-T	Hetero	INTERGENIC
SBS	Chr11	24476145	T-A	Hetero	INTRON
SBS	Chr11	25833857	G-A	Hetero	INTERGENIC
SBS	Chr12	9205270	G-A	Hetero	INTERGENIC
SBS	Chr12	10684983	A-G	Hetero	INTERGENIC
SBS	Chr12	21357335	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	503126	503132	6
Deletion	Chr11	1151638	1151673	35
Deletion	Chr6	2304993	2305025	32
Deletion	Chr8	12245496	12245498	2
Deletion	Chr3	12436777	12436779	2
Deletion	Chr7	14041001	14060000	18999
Deletion	Chr5	16488499	16488500	1
Deletion	Chr2	17337001	17353000	15999	2
Deletion	Chr5	18537468	18537477	9	OsKitaake05g144800
Deletion	Chr2	20334696	20334697	1
Deletion	Chr12	26130530	26130532	2
Deletion	Chr3	26898319	26898321	2
Deletion	Chr4	28177150	28177154	4
Deletion	Chr11	29035001	29046000	10999	2
Deletion	Chr11	29103600	29103602	2
Deletion	Chr2	30541149	30541150	1	OsKitaake02g311800
Deletion	Chr1	36615423	36615429	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	1771497	1902836	2
Inversion	Chr5	1772276	1926912	OsKitaake05g020600
Inversion	Chr11	24465703	24623502	OsKitaake11g199101
Inversion	Chr11	24465731	24623508	OsKitaake11g199101
Inversion	Chr4	36449903	36745316
Inversion	Chr4	36449912	36745322

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes