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Mutant Information

Mutant Name	FN3256-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3256-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1982208 C-A Hetero INTRON
SBS Chr1 2400857 C-A Hetero INTERGENIC
SBS Chr1 21217759 G-A Hetero INTERGENIC
SBS Chr1 26046174 G-A Hetero INTERGENIC
SBS Chr1 26632589 T-C Hetero INTERGENIC
SBS Chr1 43211769 G-A Hetero INTERGENIC
SBS Chr3 16447211 T-A Hetero INTERGENIC
SBS Chr3 17504414 A-T Hetero INTERGENIC
SBS Chr3 26000315 A-T Hetero INTERGENIC
SBS Chr3 30490104 C-T Homo INTRON
SBS Chr3 34777554 A-G Homo UTR_3_PRIME
SBS Chr4 18102977 G-A Homo INTERGENIC
SBS Chr4 34401715 G-A Homo INTERGENIC
SBS Chr4 34401716 G-A Homo INTERGENIC
SBS Chr5 8403293 C-T Hetero INTERGENIC
SBS Chr5 12431889 C-T Hetero INTERGENIC
SBS Chr5 29987370 G-T Homo INTRON
SBS Chr6 1612974 G-T Homo INTERGENIC
SBS Chr6 1732611 G-T Homo INTERGENIC
SBS Chr6 1953651 G-A Hetero START_GAINED
SBS Chr6 13377878 T-A Homo INTERGENIC
SBS Chr6 13377879 C-A Homo INTERGENIC
SBS Chr6 24517574 G-C Hetero INTRON
SBS Chr6 30584501 C-G Hetero INTERGENIC
SBS Chr7 5436337 T-A Homo INTRON
SBS Chr7 21994900 G-T Hetero INTERGENIC
SBS Chr8 18531942 G-A Hetero INTERGENIC
SBS Chr8 19680369 C-A Hetero INTERGENIC
SBS Chr8 21625126 A-T Homo INTRON
SBS Chr9 2513056 C-T Homo INTERGENIC
SBS Chr9 6614871 C-T Homo INTERGENIC
SBS Chr9 10389019 T-A Homo INTERGENIC
SBS Chr9 15648781 T-A Hetero INTRON
SBS Chr9 17990390 C-T Hetero INTERGENIC
SBS Chr11 654186 C-G Hetero INTERGENIC
SBS Chr11 8741706 C-T Hetero INTERGENIC
SBS Chr11 25089854 T-C Hetero INTERGENIC
SBS Chr12 9344895 G-A Hetero INTRON
SBS Chr12 15318473 T-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 5188584 5188586 2
Deletion Chr12 5452157 5452167 10
Deletion Chr3 8271291 8271298 7
Deletion Chr7 12679745 12679746 1
Deletion Chr6 16473326 16473328 2
Deletion Chr4 18085904 18085906 2
Deletion Chr1 19108196 19108198 2
Deletion Chr6 29836206 29836213 7
Deletion Chr4 30699543 30699544 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 38734287 38734291 3
Insertion Chr8 8874162 8874165 2
Insertion Chr8 10302401 10302404 2
Insertion Chr2 35328984 35328987 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1982208	C-A	Hetero	INTRON
SBS	Chr1	2400857	C-A	Hetero	INTERGENIC
SBS	Chr1	21217759	G-A	Hetero	INTERGENIC
SBS	Chr1	26046174	G-A	Hetero	INTERGENIC
SBS	Chr1	26632589	T-C	Hetero	INTERGENIC
SBS	Chr1	43211769	G-A	Hetero	INTERGENIC
SBS	Chr3	16447211	T-A	Hetero	INTERGENIC
SBS	Chr3	17504414	A-T	Hetero	INTERGENIC
SBS	Chr3	26000315	A-T	Hetero	INTERGENIC
SBS	Chr3	30490104	C-T	Homo	INTRON
SBS	Chr3	34777554	A-G	Homo	UTR_3_PRIME
SBS	Chr4	18102977	G-A	Homo	INTERGENIC
SBS	Chr4	34401715	G-A	Homo	INTERGENIC
SBS	Chr4	34401716	G-A	Homo	INTERGENIC
SBS	Chr5	8403293	C-T	Hetero	INTERGENIC
SBS	Chr5	12431889	C-T	Hetero	INTERGENIC
SBS	Chr5	29987370	G-T	Homo	INTRON
SBS	Chr6	1612974	G-T	Homo	INTERGENIC
SBS	Chr6	1732611	G-T	Homo	INTERGENIC
SBS	Chr6	1953651	G-A	Hetero	START_GAINED
SBS	Chr6	13377878	T-A	Homo	INTERGENIC
SBS	Chr6	13377879	C-A	Homo	INTERGENIC
SBS	Chr6	24517574	G-C	Hetero	INTRON
SBS	Chr6	30584501	C-G	Hetero	INTERGENIC
SBS	Chr7	5436337	T-A	Homo	INTRON
SBS	Chr7	21994900	G-T	Hetero	INTERGENIC
SBS	Chr8	18531942	G-A	Hetero	INTERGENIC
SBS	Chr8	19680369	C-A	Hetero	INTERGENIC
SBS	Chr8	21625126	A-T	Homo	INTRON
SBS	Chr9	2513056	C-T	Homo	INTERGENIC
SBS	Chr9	6614871	C-T	Homo	INTERGENIC
SBS	Chr9	10389019	T-A	Homo	INTERGENIC
SBS	Chr9	15648781	T-A	Hetero	INTRON
SBS	Chr9	17990390	C-T	Hetero	INTERGENIC
SBS	Chr11	654186	C-G	Hetero	INTERGENIC
SBS	Chr11	8741706	C-T	Hetero	INTERGENIC
SBS	Chr11	25089854	T-C	Hetero	INTERGENIC
SBS	Chr12	9344895	G-A	Hetero	INTRON
SBS	Chr12	15318473	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	5188584	5188586	2
Deletion	Chr12	5452157	5452167	10
Deletion	Chr3	8271291	8271298	7
Deletion	Chr7	12679745	12679746	1
Deletion	Chr6	16473326	16473328	2
Deletion	Chr4	18085904	18085906	2
Deletion	Chr1	19108196	19108198	2
Deletion	Chr6	29836206	29836213	7
Deletion	Chr4	30699543	30699544	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes