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| Mutant Information |
|---|
| Mutant Name | FN3257-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3257-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8583794 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 19512788 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2356837 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g033600 |
| SBS | Chr3 | 9655415 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21619634 | T-C | Homo | INTRON | |
| SBS | Chr3 | 35990192 | A-T | Homo | INTRON | |
| SBS | Chr4 | 5659134 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 21969455 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g127600 |
| SBS | Chr5 | 13830492 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 19768580 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2905353 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g039500 |
| SBS | Chr6 | 10730763 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10772149 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22852083 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4348629 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17024632 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 3695489 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 18108211 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18529893 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 24952636 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 21983757 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3776367 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 10803358 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19504970 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g143100 |
| SBS | Chr10 | 19702613 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 19702614 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7839208 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15362065 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 18336003 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g142600 |
| SBS | Chr11 | 26824862 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 27187535 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10694610 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15149729 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17355547 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 24686100 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24735307 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 1724783 | 1724789 | 6 | |
| Deletion | Chr12 | 3488001 | 3531000 | 42999 | 5 |
| Deletion | Chr5 | 7020451 | 7020452 | 1 | |
| Deletion | Chr10 | 10488496 | 10488497 | 1 | |
| Deletion | Chr7 | 11831593 | 11831594 | 1 | |
| Deletion | Chr5 | 14690821 | 14690822 | 1 | |
| Deletion | Chr5 | 15028790 | 15028799 | 9 | |
| Deletion | Chr7 | 15687217 | 15687227 | 10 | OsKitaake07g129800 |
| Deletion | Chr8 | 17065125 | 17065127 | 2 | |
| Deletion | Chr12 | 18691650 | 18691651 | 1 | |
| Deletion | Chr5 | 20311909 | 20311911 | 2 | OsKitaake05g161700 |
| Deletion | Chr4 | 22260878 | 22260881 | 3 | |
| Deletion | Chr6 | 28449896 | 28449897 | 1 | |
| Deletion | Chr1 | 32634139 | 32634140 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 2545129 | 2545132 | 2 | |
| Insertion | Chr9 | 3753310 | 3753313 | 2 | |
| Insertion | Chr11 | 5520135 | 5520142 | 6 | OsKitaake11g067600  |