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| Mutant Information |
|---|
| Mutant Name | FN3261-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3261-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 18
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20847021 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17841914 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26707634 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 31585622 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 32894659 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 33373614 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 34465401 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24814545 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr6 | 16008305 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18579934 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25023523 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 3600104 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14961973 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr11 | 1012987 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 1340006 | A-G | Homo | INTRON | |
| SBS | Chr11 | 13200074 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13218315 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22165857 | G-A | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1594001 | 1942000 | 347999 | 42 |
| Deletion | Chr11 | 6460001 | 6470000 | 9999 | OsKitaake11g076700 |
| Deletion | Chr2 | 11251001 | 11270000 | 18999 | 2 |
| Deletion | Chr3 | 22974001 | 22996000 | 21999 | |
| Deletion | Chr2 | 30552637 | 30552708 | 71 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 28638152 | 28638155 | 2 | |
| Insertion | Chr9 | 2738311 | 2738313 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2342879 | 2695485 | OsKitaake10g022100 |
| Inversion | Chr5 | 19933434 | 20774612 | OsKitaake05g165900 |
| Inversion | Chr4 | 27935369 | 28497469 | OsKitaake04g207000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 19253444 | Chr3 | 34739873 | OsKitaake03g378300 |
| Translocation | Chr9 | 19255112 | Chr3 | 34739872 | OsKitaake03g378300 |