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Mutant Information

Mutant Name	FN3262-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3262-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 17304991 C-T Hetero INTERGENIC
SBS Chr1 33065237 G-T Hetero INTERGENIC
SBS Chr1 34462476 G-A Hetero INTERGENIC
SBS Chr2 13197294 A-T Homo INTERGENIC
SBS Chr2 31874746 G-A Hetero INTERGENIC
SBS Chr3 17186721 G-A Homo INTERGENIC
SBS Chr3 22066639 G-A Hetero INTERGENIC
SBS Chr3 36236434 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g401300
SBS Chr4 5710377 G-T Hetero INTERGENIC
SBS Chr4 12055167 C-T Hetero INTERGENIC
SBS Chr4 17640433 C-A Hetero INTRON
SBS Chr4 25251402 A-C Homo INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 31413926 C-T Homo INTERGENIC
SBS Chr4 34468494 T-A Homo INTRON
SBS Chr5 2134585 A-T Homo INTERGENIC
SBS Chr5 6869311 T-G Hetero INTERGENIC
SBS Chr5 7352956 C-T Hetero INTERGENIC
SBS Chr5 10213879 C-G Hetero INTERGENIC
SBS Chr5 11499632 C-T Hetero INTERGENIC
SBS Chr5 12195989 C-T Hetero INTERGENIC
SBS Chr5 14456749 C-T Hetero STOP_GAINED OsKitaake05g110100
SBS Chr5 18325556 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g142502
SBS Chr6 15696528 C-A Hetero INTERGENIC
SBS Chr7 10825732 T-C Hetero INTERGENIC
SBS Chr8 8581098 G-A Homo INTERGENIC
SBS Chr8 12904990 T-C Hetero INTERGENIC
SBS Chr8 17875557 C-T Hetero INTERGENIC
SBS Chr9 8507489 A-G Hetero INTERGENIC
SBS Chr9 15823123 T-G Hetero INTERGENIC
SBS Chr9 17331403 A-T Hetero INTERGENIC
SBS Chr11 14291272 T-C Hetero INTRON
SBS Chr11 21095637 T-A Hetero INTERGENIC
SBS Chr11 22328064 C-T Hetero INTERGENIC
SBS Chr12 22613221 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g177800

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 10988751 10988754 3
Deletion Chr10 11203773 11203779 6
Deletion Chr4 13026119 13026122 3
Deletion Chr4 13069001 13081000 11999
Deletion Chr9 16502941 16502944 3
Deletion Chr6 17417851 17417853 2
Deletion Chr10 18698569 18698570 1
Deletion Chr1 18702204 18702210 6
Deletion Chr6 20587889 20587890 1
Deletion Chr10 21766145 21766147 2
Deletion Chr3 23190410 23190419 9
Deletion Chr2 24305785 24305791 6
Deletion Chr7 24536001 24558000 21999 2
Deletion Chr2 24596501 24596502 1
Deletion Chr2 27962865 27962871 6
Deletion Chr1 30846406 30846420 14
Deletion Chr1 42042739 42042740 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19918371 19918373 1
Insertion Chr4 412057 412059 1
Insertion Chr5 16485465 16485468 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14263050 14313450
Inversion Chr9 18099271 18378782 OsKitaake09g139000
Inversion Chr9 18099274 18378793 OsKitaake09g139000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17304991	C-T	Hetero	INTERGENIC
SBS	Chr1	33065237	G-T	Hetero	INTERGENIC
SBS	Chr1	34462476	G-A	Hetero	INTERGENIC
SBS	Chr2	13197294	A-T	Homo	INTERGENIC
SBS	Chr2	31874746	G-A	Hetero	INTERGENIC
SBS	Chr3	17186721	G-A	Homo	INTERGENIC
SBS	Chr3	22066639	G-A	Hetero	INTERGENIC
SBS	Chr3	36236434	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g401300
SBS	Chr4	5710377	G-T	Hetero	INTERGENIC
SBS	Chr4	12055167	C-T	Hetero	INTERGENIC
SBS	Chr4	17640433	C-A	Hetero	INTRON
SBS	Chr4	25251402	A-C	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	31413926	C-T	Homo	INTERGENIC
SBS	Chr4	34468494	T-A	Homo	INTRON
SBS	Chr5	2134585	A-T	Homo	INTERGENIC
SBS	Chr5	6869311	T-G	Hetero	INTERGENIC
SBS	Chr5	7352956	C-T	Hetero	INTERGENIC
SBS	Chr5	10213879	C-G	Hetero	INTERGENIC
SBS	Chr5	11499632	C-T	Hetero	INTERGENIC
SBS	Chr5	12195989	C-T	Hetero	INTERGENIC
SBS	Chr5	14456749	C-T	Hetero	STOP_GAINED	OsKitaake05g110100
SBS	Chr5	18325556	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g142502
SBS	Chr6	15696528	C-A	Hetero	INTERGENIC
SBS	Chr7	10825732	T-C	Hetero	INTERGENIC
SBS	Chr8	8581098	G-A	Homo	INTERGENIC
SBS	Chr8	12904990	T-C	Hetero	INTERGENIC
SBS	Chr8	17875557	C-T	Hetero	INTERGENIC
SBS	Chr9	8507489	A-G	Hetero	INTERGENIC
SBS	Chr9	15823123	T-G	Hetero	INTERGENIC
SBS	Chr9	17331403	A-T	Hetero	INTERGENIC
SBS	Chr11	14291272	T-C	Hetero	INTRON
SBS	Chr11	21095637	T-A	Hetero	INTERGENIC
SBS	Chr11	22328064	C-T	Hetero	INTERGENIC
SBS	Chr12	22613221	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g177800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	10988751	10988754	3
Deletion	Chr10	11203773	11203779	6
Deletion	Chr4	13026119	13026122	3
Deletion	Chr4	13069001	13081000	11999
Deletion	Chr9	16502941	16502944	3
Deletion	Chr6	17417851	17417853	2
Deletion	Chr10	18698569	18698570	1
Deletion	Chr1	18702204	18702210	6
Deletion	Chr6	20587889	20587890	1
Deletion	Chr10	21766145	21766147	2
Deletion	Chr3	23190410	23190419	9
Deletion	Chr2	24305785	24305791	6
Deletion	Chr7	24536001	24558000	21999	2
Deletion	Chr2	24596501	24596502	1
Deletion	Chr2	27962865	27962871	6
Deletion	Chr1	30846406	30846420	14
Deletion	Chr1	42042739	42042740	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14263050	14313450
Inversion	Chr9	18099271	18378782	OsKitaake09g139000
Inversion	Chr9	18099274	18378793	OsKitaake09g139000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes