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Mutant Information

Mutant Name	FN3263-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3263-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11151556 G-T Homo INTERGENIC
SBS Chr1 23292799 A-T Hetero INTERGENIC
SBS Chr1 32905919 G-A Hetero INTRON
SBS Chr1 34161335 C-T Hetero INTERGENIC
SBS Chr1 34161346 G-T Hetero INTERGENIC
SBS Chr1 40839131 T-A Hetero START_GAINED
SBS Chr1 43681063 A-C Hetero UTR_5_PRIME
SBS Chr2 13564477 G-A Hetero INTERGENIC
SBS Chr2 18083439 C-A Homo INTERGENIC
SBS Chr2 32401169 C-T Homo INTERGENIC
SBS Chr3 36359394 T-A Hetero INTERGENIC
SBS Chr3 36359397 T-G Hetero INTERGENIC
SBS Chr4 1738304 G-A Hetero INTERGENIC
SBS Chr4 7786747 G-T Homo INTERGENIC
SBS Chr4 16463598 G-A Hetero INTERGENIC
SBS Chr4 29038454 A-T Hetero INTERGENIC
SBS Chr5 28874132 C-T Hetero INTERGENIC
SBS Chr6 21110127 A-T Hetero INTERGENIC
SBS Chr7 174074 C-T Hetero INTERGENIC
SBS Chr7 2259595 G-A Hetero INTERGENIC
SBS Chr7 7786226 C-G Hetero INTERGENIC
SBS Chr7 9668406 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g096900
SBS Chr7 20770320 C-T Hetero INTERGENIC
SBS Chr8 8833582 A-T Hetero INTERGENIC
SBS Chr8 22619980 T-A Hetero INTERGENIC
SBS Chr8 25434274 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g200000
SBS Chr8 27300367 C-T Hetero INTRON
SBS Chr8 27611833 G-A Hetero INTERGENIC
SBS Chr9 14739005 C-G Hetero INTERGENIC
SBS Chr9 14922759 C-T Hetero INTERGENIC
SBS Chr10 6805366 C-A Hetero INTERGENIC
SBS Chr11 11593925 C-T Hetero INTERGENIC
SBS Chr11 14252273 C-T Hetero INTERGENIC
SBS Chr11 16155802 A-C Hetero INTERGENIC
SBS Chr11 19297291 G-A Homo INTERGENIC
SBS Chr11 24385621 G-A Homo INTERGENIC
SBS Chr11 25096756 C-T Homo INTERGENIC
SBS Chr12 3235087 T-C Hetero INTERGENIC
SBS Chr12 13176957 A-T Homo INTERGENIC
SBS Chr12 18598278 C-G Hetero INTERGENIC
SBS Chr12 21539712 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 837001 890000 52999 2
Deletion Chr2 2672636 2672637 1
Deletion Chr12 3292878 3292890 12 OsKitaake12g046700
Deletion Chr7 4451233 4451235 2
Deletion Chr3 5503191 5503192 1
Deletion Chr10 5818631 5818632 1
Deletion Chr11 8552790 8552795 5
Deletion Chr8 8847798 8847807 9
Deletion Chr8 9309993 9309994 1 OsKitaake08g085101
Deletion Chr9 11342959 11342961 2
Deletion Chr4 14676996 14677001 5
Deletion Chr7 16078924 16078928 4
Deletion Chr8 18482974 18482976 2
Deletion Chr4 19519468 19519469 1
Deletion Chr6 20857080 20857081 1
Deletion Chr1 23293408 23293409 1
Deletion Chr11 23837846 23837857 11 OsKitaake11g191100
Deletion Chr12 25608958 25608960 2 OsKitaake12g210900
Deletion Chr8 27134719 27134731 12 OsKitaake08g221800
Deletion Chr8 28056553 28056564 11
Deletion Chr7 28247320 28247322 2
Deletion Chr1 33760414 33760415 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27689455 27689459 3

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 7713942 7893120
Inversion Chr9 7713952 7893120
Inversion Chr1 31734935 32241035
Inversion Chr1 31734946 32581915 OsKitaake01g330400
Inversion Chr1 32132988 32581906 OsKitaake01g330400
Inversion Chr1 32132994 32133545 OsKitaake01g324100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6519141 Chr7 25602213
Translocation Chr10 8667986 Chr1 17284457

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11151556	G-T	Homo	INTERGENIC
SBS	Chr1	23292799	A-T	Hetero	INTERGENIC
SBS	Chr1	32905919	G-A	Hetero	INTRON
SBS	Chr1	34161335	C-T	Hetero	INTERGENIC
SBS	Chr1	34161346	G-T	Hetero	INTERGENIC
SBS	Chr1	40839131	T-A	Hetero	START_GAINED
SBS	Chr1	43681063	A-C	Hetero	UTR_5_PRIME
SBS	Chr2	13564477	G-A	Hetero	INTERGENIC
SBS	Chr2	18083439	C-A	Homo	INTERGENIC
SBS	Chr2	32401169	C-T	Homo	INTERGENIC
SBS	Chr3	36359394	T-A	Hetero	INTERGENIC
SBS	Chr3	36359397	T-G	Hetero	INTERGENIC
SBS	Chr4	1738304	G-A	Hetero	INTERGENIC
SBS	Chr4	7786747	G-T	Homo	INTERGENIC
SBS	Chr4	16463598	G-A	Hetero	INTERGENIC
SBS	Chr4	29038454	A-T	Hetero	INTERGENIC
SBS	Chr5	28874132	C-T	Hetero	INTERGENIC
SBS	Chr6	21110127	A-T	Hetero	INTERGENIC
SBS	Chr7	174074	C-T	Hetero	INTERGENIC
SBS	Chr7	2259595	G-A	Hetero	INTERGENIC
SBS	Chr7	7786226	C-G	Hetero	INTERGENIC
SBS	Chr7	9668406	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g096900
SBS	Chr7	20770320	C-T	Hetero	INTERGENIC
SBS	Chr8	8833582	A-T	Hetero	INTERGENIC
SBS	Chr8	22619980	T-A	Hetero	INTERGENIC
SBS	Chr8	25434274	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g200000
SBS	Chr8	27300367	C-T	Hetero	INTRON
SBS	Chr8	27611833	G-A	Hetero	INTERGENIC
SBS	Chr9	14739005	C-G	Hetero	INTERGENIC
SBS	Chr9	14922759	C-T	Hetero	INTERGENIC
SBS	Chr10	6805366	C-A	Hetero	INTERGENIC
SBS	Chr11	11593925	C-T	Hetero	INTERGENIC
SBS	Chr11	14252273	C-T	Hetero	INTERGENIC
SBS	Chr11	16155802	A-C	Hetero	INTERGENIC
SBS	Chr11	19297291	G-A	Homo	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr12	3235087	T-C	Hetero	INTERGENIC
SBS	Chr12	13176957	A-T	Homo	INTERGENIC
SBS	Chr12	18598278	C-G	Hetero	INTERGENIC
SBS	Chr12	21539712	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	837001	890000	52999	2
Deletion	Chr2	2672636	2672637	1
Deletion	Chr12	3292878	3292890	12	OsKitaake12g046700
Deletion	Chr7	4451233	4451235	2
Deletion	Chr3	5503191	5503192	1
Deletion	Chr10	5818631	5818632	1
Deletion	Chr11	8552790	8552795	5
Deletion	Chr8	8847798	8847807	9
Deletion	Chr8	9309993	9309994	1	OsKitaake08g085101
Deletion	Chr9	11342959	11342961	2
Deletion	Chr4	14676996	14677001	5
Deletion	Chr7	16078924	16078928	4
Deletion	Chr8	18482974	18482976	2
Deletion	Chr4	19519468	19519469	1
Deletion	Chr6	20857080	20857081	1
Deletion	Chr1	23293408	23293409	1
Deletion	Chr11	23837846	23837857	11	OsKitaake11g191100
Deletion	Chr12	25608958	25608960	2	OsKitaake12g210900
Deletion	Chr8	27134719	27134731	12	OsKitaake08g221800
Deletion	Chr8	28056553	28056564	11
Deletion	Chr7	28247320	28247322	2
Deletion	Chr1	33760414	33760415	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	7713942	7893120
Inversion	Chr9	7713952	7893120
Inversion	Chr1	31734935	32241035
Inversion	Chr1	31734946	32581915	OsKitaake01g330400
Inversion	Chr1	32132988	32581906	OsKitaake01g330400
Inversion	Chr1	32132994	32133545	OsKitaake01g324100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes