Search Kitaake

Mutant Information

Mutant Name	FN3268-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3268-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37769898 T-G Hetero INTERGENIC
SBS Chr2 21510939 T-C Hetero INTERGENIC
SBS Chr3 19705458 C-T Hetero INTERGENIC
SBS Chr3 29967032 G-A Hetero INTERGENIC
SBS Chr4 3570645 C-T Hetero INTERGENIC
SBS Chr4 8203515 A-C Hetero INTERGENIC
SBS Chr4 10563339 C-T Hetero INTERGENIC
SBS Chr4 22719325 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g135100
SBS Chr6 1617421 A-T Hetero UTR_3_PRIME
SBS Chr6 5750922 A-T Homo INTERGENIC
SBS Chr6 9926696 G-T Hetero INTERGENIC
SBS Chr7 2578388 G-A Hetero INTERGENIC
SBS Chr7 6772903 C-T Hetero INTERGENIC
SBS Chr8 10687615 A-G Hetero INTERGENIC
SBS Chr8 18190264 G-A Hetero UTR_5_PRIME
SBS Chr9 5064533 A-C Hetero INTERGENIC
SBS Chr9 13355377 T-C Hetero INTERGENIC
SBS Chr10 11079266 T-C Homo INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr10 18047740 T-A Hetero INTERGENIC
SBS Chr11 9636738 T-A Hetero INTERGENIC
SBS Chr11 21554764 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 128877 128891 14 OsKitaake11g000240
Deletion Chr8 1067129 1067130 1
Deletion Chr2 1551001 1596000 44999 14
Deletion Chr4 3580143 3580145 2
Deletion Chr9 5331001 5364000 32999 3
Deletion Chr7 5619305 5619306 1
Deletion Chr1 7632420 7632435 15 OsKitaake01g095900
Deletion Chr2 8860001 8915000 54999 4
Deletion Chr2 9892759 9892780 21
Deletion Chr11 14842880 14842883 3
Deletion Chr6 21788106 21788129 23
Deletion Chr5 23759830 23759851 21
Deletion Chr6 25852063 25852064 1
Deletion Chr8 27816872 27816892 20
Deletion Chr3 29181541 29181543 2
Deletion Chr3 35040290 35040298 8

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 36723632 36723635 2
Insertion Chr7 2861576 2861579 2
Insertion Chr8 24192526 24192529 2
Insertion Chr9 14282365 14282368 2
Insertion Chr10 11523230 11523234 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 26636928 26707567 OsKitaake12g221400

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 26368100 Chr3 29880111 OsKitaake03g312500
Translocation Chr7 26368105 Chr3 29841679
Translocation Chr12 26707601 Chr2 8912001
Translocation Chr12 26737440 Chr2 8864699 OsKitaake02g111600
Translocation Chr12 26737446 Chr2 33893811 OsKitaake02g351200
Translocation Chr12 26738519 Chr1 43942166 OsKitaake01g490000
Translocation Chr12 26945975 Chr1 43962391 OsKitaake12g225801

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37769898	T-G	Hetero	INTERGENIC
SBS	Chr2	21510939	T-C	Hetero	INTERGENIC
SBS	Chr3	19705458	C-T	Hetero	INTERGENIC
SBS	Chr3	29967032	G-A	Hetero	INTERGENIC
SBS	Chr4	3570645	C-T	Hetero	INTERGENIC
SBS	Chr4	8203515	A-C	Hetero	INTERGENIC
SBS	Chr4	10563339	C-T	Hetero	INTERGENIC
SBS	Chr4	22719325	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g135100
SBS	Chr6	1617421	A-T	Hetero	UTR_3_PRIME
SBS	Chr6	5750922	A-T	Homo	INTERGENIC
SBS	Chr6	9926696	G-T	Hetero	INTERGENIC
SBS	Chr7	2578388	G-A	Hetero	INTERGENIC
SBS	Chr7	6772903	C-T	Hetero	INTERGENIC
SBS	Chr8	10687615	A-G	Hetero	INTERGENIC
SBS	Chr8	18190264	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	5064533	A-C	Hetero	INTERGENIC
SBS	Chr9	13355377	T-C	Hetero	INTERGENIC
SBS	Chr10	11079266	T-C	Homo	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr10	18047740	T-A	Hetero	INTERGENIC
SBS	Chr11	9636738	T-A	Hetero	INTERGENIC
SBS	Chr11	21554764	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	128877	128891	14	OsKitaake11g000240
Deletion	Chr8	1067129	1067130	1
Deletion	Chr2	1551001	1596000	44999	14
Deletion	Chr4	3580143	3580145	2
Deletion	Chr9	5331001	5364000	32999	3
Deletion	Chr7	5619305	5619306	1
Deletion	Chr1	7632420	7632435	15	OsKitaake01g095900
Deletion	Chr2	8860001	8915000	54999	4
Deletion	Chr2	9892759	9892780	21
Deletion	Chr11	14842880	14842883	3
Deletion	Chr6	21788106	21788129	23
Deletion	Chr5	23759830	23759851	21
Deletion	Chr6	25852063	25852064	1
Deletion	Chr8	27816872	27816892	20
Deletion	Chr3	29181541	29181543	2
Deletion	Chr3	35040290	35040298	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	26636928	26707567	OsKitaake12g221400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes