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Mutant Information

Mutant Name	FN3269-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3269-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19956636 C-T Homo INTERGENIC
SBS Chr1 40260755 T-C Hetero UTR_3_PRIME
SBS Chr2 34982824 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g365400
SBS Chr3 18445095 C-T Homo INTRON
SBS Chr3 24902423 T-C Hetero INTERGENIC
SBS Chr4 1664155 G-A Hetero INTERGENIC
SBS Chr4 2632311 C-A Hetero INTERGENIC
SBS Chr4 6207431 G-C Hetero INTERGENIC
SBS Chr4 8851318 C-G Hetero INTERGENIC
SBS Chr4 31182230 A-G Homo START_GAINED
SBS Chr5 1838755 C-T Homo INTERGENIC
SBS Chr5 1838757 A-C Homo INTERGENIC
SBS Chr5 8517775 C-A Hetero INTERGENIC
SBS Chr5 9165356 C-A Hetero INTERGENIC
SBS Chr6 7110642 G-A Hetero INTERGENIC
SBS Chr6 25678116 A-G Homo INTERGENIC
SBS Chr7 6679244 A-G Homo INTERGENIC
SBS Chr8 481061 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g007100
SBS Chr8 1560181 G-T Hetero UTR_3_PRIME
SBS Chr8 1560183 T-C Hetero UTR_3_PRIME
SBS Chr8 11179760 T-C Hetero INTRON
SBS Chr8 13101510 C-A Hetero INTERGENIC
SBS Chr8 14101831 G-T Hetero INTERGENIC
SBS Chr8 14101832 C-T Hetero INTERGENIC
SBS Chr8 15743286 A-T Hetero SPLICE_SITE_ACCEPTOR OsKitaake08g121600
SBS Chr9 13340055 C-T Hetero INTERGENIC
SBS Chr9 17695230 C-T Hetero INTERGENIC
SBS Chr10 3243101 C-A Homo INTERGENIC
SBS Chr10 21500434 C-A Hetero INTERGENIC
SBS Chr11 9940619 C-T Hetero INTERGENIC
SBS Chr11 10522663 C-T Hetero INTERGENIC
SBS Chr11 10522664 A-T Hetero INTERGENIC
SBS Chr11 15094292 C-T Hetero INTERGENIC
SBS Chr11 16716527 C-T Hetero INTERGENIC
SBS Chr11 25941068 T-G Hetero INTERGENIC
SBS Chr11 27085912 A-T Hetero INTERGENIC
SBS Chr12 5629923 T-C Hetero INTERGENIC
SBS Chr12 21023146 T-C Homo INTERGENIC

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 788482 788486 4
Deletion Chr8 1757242 1757243 1
Deletion Chr9 2672783 2672785 2 OsKitaake09g014700
Deletion Chr8 3943044 3943049 5
Deletion Chr4 5729636 5729638 2
Deletion Chr9 6696071 6696080 9
Deletion Chr1 7218295 7218300 5
Deletion Chr7 9695536 9695541 5
Deletion Chr7 10367565 10367566 1
Deletion Chr3 13170608 13170613 5
Deletion Chr3 13187468 13187472 4 OsKitaake03g176300
Deletion Chr7 13290265 13290267 2
Deletion Chr12 13688453 13688464 11 OsKitaake12g112800
Deletion Chr3 13755916 13755917 1
Deletion Chr2 20284169 20284171 2
Deletion Chr4 20561918 20561926 8
Deletion Chr1 21334934 21334946 12
Deletion Chr10 22824869 22824878 9
Deletion Chr4 22827512 22827517 5 OsKitaake04g137100
Deletion Chr11 23006684 23006686 2
Deletion Chr6 23840517 23840523 6
Deletion Chr6 24830588 24830589 1 OsKitaake06g220700
Deletion Chr3 25457863 25457865 2
Deletion Chr7 25742490 25742498 8
Deletion Chr8 26549989 26549998 9
Deletion Chr1 32459941 32459967 26
Deletion Chr1 36194996 36195010 14
Deletion Chr1 44213190 44213200 10

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 4976579 4976582 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 6064461 6067772
Inversion Chr11 10161615 10233372
Inversion Chr11 10233358 10763190
Inversion Chr11 10521853 10540507
Inversion Chr11 10540514 10763646

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 10521863 Chr5 22471622
Translocation Chr9 14949534 Chr8 13059828

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19956636	C-T	Homo	INTERGENIC
SBS	Chr1	40260755	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	34982824	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g365400
SBS	Chr3	18445095	C-T	Homo	INTRON
SBS	Chr3	24902423	T-C	Hetero	INTERGENIC
SBS	Chr4	1664155	G-A	Hetero	INTERGENIC
SBS	Chr4	2632311	C-A	Hetero	INTERGENIC
SBS	Chr4	6207431	G-C	Hetero	INTERGENIC
SBS	Chr4	8851318	C-G	Hetero	INTERGENIC
SBS	Chr4	31182230	A-G	Homo	START_GAINED
SBS	Chr5	1838755	C-T	Homo	INTERGENIC
SBS	Chr5	1838757	A-C	Homo	INTERGENIC
SBS	Chr5	8517775	C-A	Hetero	INTERGENIC
SBS	Chr5	9165356	C-A	Hetero	INTERGENIC
SBS	Chr6	7110642	G-A	Hetero	INTERGENIC
SBS	Chr6	25678116	A-G	Homo	INTERGENIC
SBS	Chr7	6679244	A-G	Homo	INTERGENIC
SBS	Chr8	481061	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g007100
SBS	Chr8	1560181	G-T	Hetero	UTR_3_PRIME
SBS	Chr8	1560183	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	11179760	T-C	Hetero	INTRON
SBS	Chr8	13101510	C-A	Hetero	INTERGENIC
SBS	Chr8	14101831	G-T	Hetero	INTERGENIC
SBS	Chr8	14101832	C-T	Hetero	INTERGENIC
SBS	Chr8	15743286	A-T	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake08g121600
SBS	Chr9	13340055	C-T	Hetero	INTERGENIC
SBS	Chr9	17695230	C-T	Hetero	INTERGENIC
SBS	Chr10	3243101	C-A	Homo	INTERGENIC
SBS	Chr10	21500434	C-A	Hetero	INTERGENIC
SBS	Chr11	9940619	C-T	Hetero	INTERGENIC
SBS	Chr11	10522663	C-T	Hetero	INTERGENIC
SBS	Chr11	10522664	A-T	Hetero	INTERGENIC
SBS	Chr11	15094292	C-T	Hetero	INTERGENIC
SBS	Chr11	16716527	C-T	Hetero	INTERGENIC
SBS	Chr11	25941068	T-G	Hetero	INTERGENIC
SBS	Chr11	27085912	A-T	Hetero	INTERGENIC
SBS	Chr12	5629923	T-C	Hetero	INTERGENIC
SBS	Chr12	21023146	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	788482	788486	4
Deletion	Chr8	1757242	1757243	1
Deletion	Chr9	2672783	2672785	2	OsKitaake09g014700
Deletion	Chr8	3943044	3943049	5
Deletion	Chr4	5729636	5729638	2
Deletion	Chr9	6696071	6696080	9
Deletion	Chr1	7218295	7218300	5
Deletion	Chr7	9695536	9695541	5
Deletion	Chr7	10367565	10367566	1
Deletion	Chr3	13170608	13170613	5
Deletion	Chr3	13187468	13187472	4	OsKitaake03g176300
Deletion	Chr7	13290265	13290267	2
Deletion	Chr12	13688453	13688464	11	OsKitaake12g112800
Deletion	Chr3	13755916	13755917	1
Deletion	Chr2	20284169	20284171	2
Deletion	Chr4	20561918	20561926	8
Deletion	Chr1	21334934	21334946	12
Deletion	Chr10	22824869	22824878	9
Deletion	Chr4	22827512	22827517	5	OsKitaake04g137100
Deletion	Chr11	23006684	23006686	2
Deletion	Chr6	23840517	23840523	6
Deletion	Chr6	24830588	24830589	1	OsKitaake06g220700
Deletion	Chr3	25457863	25457865	2
Deletion	Chr7	25742490	25742498	8
Deletion	Chr8	26549989	26549998	9
Deletion	Chr1	32459941	32459967	26
Deletion	Chr1	36194996	36195010	14
Deletion	Chr1	44213190	44213200	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	6064461	6067772
Inversion	Chr11	10161615	10233372
Inversion	Chr11	10233358	10763190
Inversion	Chr11	10521853	10540507
Inversion	Chr11	10540514	10763646

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes