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Mutant Information

Mutant Name	FN3270-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3270-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14588306 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 32963788 A-T Homo NON_SYNONYMOUS_CODING OsKitaake01g335700
SBS Chr1 38597008 G-A Hetero INTERGENIC
SBS Chr2 1706489 A-G Hetero INTRON
SBS Chr2 4798740 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g066400
SBS Chr2 26554047 G-T Hetero INTERGENIC
SBS Chr3 21278588 T-G Homo INTERGENIC
SBS Chr3 25942317 C-G Hetero INTERGENIC
SBS Chr4 12400884 G-A Homo INTERGENIC
SBS Chr4 14700859 C-T Hetero INTERGENIC
SBS Chr4 26480522 T-A Hetero INTERGENIC
SBS Chr4 29428616 T-A Homo SPLICE_SITE_REGION
SBS Chr4 30243997 C-T Homo INTERGENIC
SBS Chr5 4793341 C-T Homo INTERGENIC
SBS Chr5 7002453 C-G Homo UTR_5_PRIME
SBS Chr5 9745526 G-A Homo INTERGENIC
SBS Chr5 12175571 T-G Homo INTERGENIC
SBS Chr5 15248978 A-C Homo INTERGENIC
SBS Chr6 6910758 A-T Homo INTERGENIC
SBS Chr6 12623791 G-A Hetero UTR_3_PRIME
SBS Chr6 15735013 C-A Hetero INTERGENIC
SBS Chr6 15778177 T-C Hetero INTERGENIC
SBS Chr6 19623089 G-A Hetero INTERGENIC
SBS Chr7 10173868 A-C Homo INTERGENIC
SBS Chr8 1010042 G-A Hetero INTERGENIC
SBS Chr8 7492250 C-G Homo INTERGENIC
SBS Chr8 12981155 T-G Hetero INTERGENIC
SBS Chr8 16598263 C-T Hetero INTERGENIC
SBS Chr8 16647155 G-T Hetero INTERGENIC
SBS Chr9 15804107 A-T Homo UTR_3_PRIME
SBS Chr10 13164308 T-C Hetero INTERGENIC
SBS Chr10 16734771 G-A Hetero INTERGENIC
SBS Chr11 28639 C-T Hetero INTRON
SBS Chr11 10799175 C-T Hetero INTERGENIC
SBS Chr11 15621755 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g125600
SBS Chr12 4371366 A-G Homo INTERGENIC
SBS Chr12 25311004 A-G Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1708970 1708975 5
Deletion Chr6 7578406 7578409 3
Deletion Chr10 8742003 8742005 2
Deletion Chr7 8859810 8859813 3
Deletion Chr2 9324164 9324167 3
Deletion Chr4 10800644 10800650 6
Deletion Chr7 16038001 16063000 24999 2
Deletion Chr2 17313114 17313123 9
Deletion Chr8 19954741 19954743 2
Deletion Chr7 20136135 20136148 13
Deletion Chr10 22126378 22126379 1
Deletion Chr1 23884328 23884329 1 OsKitaake01g229400
Deletion Chr1 30395379 30395384 5
Deletion Chr4 34241829 34241833 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24362816 24362819 2
Insertion Chr12 4636245 4636248 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 27755577 28491649 OsKitaake02g279000
Inversion Chr2 27755596 28491654 OsKitaake02g279000
Inversion Chr3 34284345 34541060 OsKitaake03g371200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 13343731 Chr3 34541055 OsKitaake05g103100
Translocation Chr5 13347781 Chr3 34284338 OsKitaake03g371200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14588306	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	32963788	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g335700
SBS	Chr1	38597008	G-A	Hetero	INTERGENIC
SBS	Chr2	1706489	A-G	Hetero	INTRON
SBS	Chr2	4798740	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g066400
SBS	Chr2	26554047	G-T	Hetero	INTERGENIC
SBS	Chr3	21278588	T-G	Homo	INTERGENIC
SBS	Chr3	25942317	C-G	Hetero	INTERGENIC
SBS	Chr4	12400884	G-A	Homo	INTERGENIC
SBS	Chr4	14700859	C-T	Hetero	INTERGENIC
SBS	Chr4	26480522	T-A	Hetero	INTERGENIC
SBS	Chr4	29428616	T-A	Homo	SPLICE_SITE_REGION
SBS	Chr4	30243997	C-T	Homo	INTERGENIC
SBS	Chr5	4793341	C-T	Homo	INTERGENIC
SBS	Chr5	7002453	C-G	Homo	UTR_5_PRIME
SBS	Chr5	9745526	G-A	Homo	INTERGENIC
SBS	Chr5	12175571	T-G	Homo	INTERGENIC
SBS	Chr5	15248978	A-C	Homo	INTERGENIC
SBS	Chr6	6910758	A-T	Homo	INTERGENIC
SBS	Chr6	12623791	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	15735013	C-A	Hetero	INTERGENIC
SBS	Chr6	15778177	T-C	Hetero	INTERGENIC
SBS	Chr6	19623089	G-A	Hetero	INTERGENIC
SBS	Chr7	10173868	A-C	Homo	INTERGENIC
SBS	Chr8	1010042	G-A	Hetero	INTERGENIC
SBS	Chr8	7492250	C-G	Homo	INTERGENIC
SBS	Chr8	12981155	T-G	Hetero	INTERGENIC
SBS	Chr8	16598263	C-T	Hetero	INTERGENIC
SBS	Chr8	16647155	G-T	Hetero	INTERGENIC
SBS	Chr9	15804107	A-T	Homo	UTR_3_PRIME
SBS	Chr10	13164308	T-C	Hetero	INTERGENIC
SBS	Chr10	16734771	G-A	Hetero	INTERGENIC
SBS	Chr11	28639	C-T	Hetero	INTRON
SBS	Chr11	10799175	C-T	Hetero	INTERGENIC
SBS	Chr11	15621755	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g125600
SBS	Chr12	4371366	A-G	Homo	INTERGENIC
SBS	Chr12	25311004	A-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1708970	1708975	5
Deletion	Chr6	7578406	7578409	3
Deletion	Chr10	8742003	8742005	2
Deletion	Chr7	8859810	8859813	3
Deletion	Chr2	9324164	9324167	3
Deletion	Chr4	10800644	10800650	6
Deletion	Chr7	16038001	16063000	24999	2
Deletion	Chr2	17313114	17313123	9
Deletion	Chr8	19954741	19954743	2
Deletion	Chr7	20136135	20136148	13
Deletion	Chr10	22126378	22126379	1
Deletion	Chr1	23884328	23884329	1	OsKitaake01g229400
Deletion	Chr1	30395379	30395384	5
Deletion	Chr4	34241829	34241833	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	27755577	28491649	OsKitaake02g279000
Inversion	Chr2	27755596	28491654	OsKitaake02g279000
Inversion	Chr3	34284345	34541060	OsKitaake03g371200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes