Search Kitaake

Mutant Information

Mutant Name	FN3271-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3271-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11678561 C-T Hetero INTERGENIC
SBS Chr1 16271832 G-A Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 1383882 A-C Hetero INTRON
SBS Chr2 4270231 C-T Hetero UTR_3_PRIME
SBS Chr2 12750820 C-T Hetero INTRON
SBS Chr3 2390431 G-A Hetero INTERGENIC
SBS Chr3 7697835 G-A Hetero UTR_5_PRIME
SBS Chr3 14743942 A-T Hetero INTERGENIC
SBS Chr5 2634836 C-T Hetero INTRON
SBS Chr5 26068397 A-T Homo INTERGENIC
SBS Chr5 27273371 A-T Homo INTERGENIC
SBS Chr5 28900532 G-T Homo INTRON
SBS Chr7 8490761 C-T Homo INTERGENIC
SBS Chr7 9844772 T-A Hetero INTERGENIC
SBS Chr7 28744938 G-T Hetero INTERGENIC
SBS Chr8 7020494 C-T Homo INTERGENIC
SBS Chr9 4172313 C-T Homo INTERGENIC
SBS Chr9 4716883 A-T Hetero INTERGENIC
SBS Chr9 4932554 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g028500
SBS Chr10 1115980 G-T Hetero INTERGENIC
SBS Chr10 19419698 T-A Homo INTERGENIC
SBS Chr11 29116374 C-T Hetero INTERGENIC
SBS Chr12 3389510 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 3389514 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g048000
SBS Chr12 5034786 A-T Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 10987065 10987156 91
Deletion Chr9 14053567 14053605 38
Deletion Chr2 19602001 19992000 389999 35
Deletion Chr3 22980001 22988000 7999
Deletion Chr12 25914776 25914781 5
Deletion Chr1 42299001 42319000 19999 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 7356859 7356862 2
Insertion Chr3 23646190 23646193 2
Insertion Chr9 2740684 2740686 1
Insertion Chr10 3567668 3567670 1

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 2627526 Chr1 5761632 2
Translocation Chr7 2680347 Chr1 5763685
Translocation Chr5 18925930 Chr1 5760949 OsKitaake01g073200
Translocation Chr11 21768982 Chr1 5762285 OsKitaake01g073200
Translocation Chr11 21768995 Chr1 5761640 OsKitaake01g073200
Translocation Chr5 22576364 Chr1 5763682 OsKitaake05g185401
Translocation Chr5 22576365 Chr1 5762293 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11678561	C-T	Hetero	INTERGENIC
SBS	Chr1	16271832	G-A	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	1383882	A-C	Hetero	INTRON
SBS	Chr2	4270231	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	12750820	C-T	Hetero	INTRON
SBS	Chr3	2390431	G-A	Hetero	INTERGENIC
SBS	Chr3	7697835	G-A	Hetero	UTR_5_PRIME
SBS	Chr3	14743942	A-T	Hetero	INTERGENIC
SBS	Chr5	2634836	C-T	Hetero	INTRON
SBS	Chr5	26068397	A-T	Homo	INTERGENIC
SBS	Chr5	27273371	A-T	Homo	INTERGENIC
SBS	Chr5	28900532	G-T	Homo	INTRON
SBS	Chr7	8490761	C-T	Homo	INTERGENIC
SBS	Chr7	9844772	T-A	Hetero	INTERGENIC
SBS	Chr7	28744938	G-T	Hetero	INTERGENIC
SBS	Chr8	7020494	C-T	Homo	INTERGENIC
SBS	Chr9	4172313	C-T	Homo	INTERGENIC
SBS	Chr9	4716883	A-T	Hetero	INTERGENIC
SBS	Chr9	4932554	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g028500
SBS	Chr10	1115980	G-T	Hetero	INTERGENIC
SBS	Chr10	19419698	T-A	Homo	INTERGENIC
SBS	Chr11	29116374	C-T	Hetero	INTERGENIC
SBS	Chr12	3389510	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3389514	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g048000
SBS	Chr12	5034786	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	10987065	10987156	91
Deletion	Chr9	14053567	14053605	38
Deletion	Chr2	19602001	19992000	389999	35
Deletion	Chr3	22980001	22988000	7999
Deletion	Chr12	25914776	25914781	5
Deletion	Chr1	42299001	42319000	19999	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2627526	Chr1	5761632	2
Translocation	Chr7	2680347	Chr1	5763685
Translocation	Chr5	18925930	Chr1	5760949	OsKitaake01g073200
Translocation	Chr11	21768982	Chr1	5762285	OsKitaake01g073200
Translocation	Chr11	21768995	Chr1	5761640	OsKitaake01g073200
Translocation	Chr5	22576364	Chr1	5763682	OsKitaake05g185401
Translocation	Chr5	22576365	Chr1	5762293	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes