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Mutant Information

Mutant Name	FN3272-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3272-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 27695687 T-A Hetero INTRON
SBS Chr2 36726156 C-G Homo UTR_3_PRIME
SBS Chr3 6386768 G-C Hetero INTERGENIC
SBS Chr3 8210676 A-T Hetero INTERGENIC
SBS Chr3 8210677 A-T Hetero INTERGENIC
SBS Chr4 5427928 C-T Hetero INTERGENIC
SBS Chr4 7354583 C-A Hetero INTERGENIC
SBS Chr4 22370220 G-C Hetero INTERGENIC
SBS Chr5 1860127 C-T Homo INTERGENIC
SBS Chr6 2128062 G-A Hetero INTRON
SBS Chr6 6183669 A-G Hetero INTERGENIC
SBS Chr6 11427885 A-C Hetero INTERGENIC
SBS Chr6 20630559 A-G Hetero INTERGENIC
SBS Chr6 31019713 G-A Hetero #VALUE!
SBS Chr7 28209822 G-A Homo INTERGENIC
SBS Chr7 29385069 A-T Homo INTERGENIC
SBS Chr8 1333851 C-T Hetero INTERGENIC
SBS Chr8 16152819 C-T Hetero INTERGENIC
SBS Chr9 10769403 C-T Hetero INTERGENIC
SBS Chr10 20997491 C-T Homo INTRON
SBS Chr10 22795352 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g189500
SBS Chr11 18053142 G-T Homo INTERGENIC
SBS Chr11 19030041 A-T Homo INTERGENIC
SBS Chr12 2639926 A-G Homo INTERGENIC
SBS Chr12 23211472 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1700686 1700693 7
Deletion Chr9 5062038 5062047 9
Deletion Chr8 7784174 7784176 2
Deletion Chr4 7852943 7852956 13
Deletion Chr6 8440169 8440170 1
Deletion Chr1 10346148 10346149 1
Deletion Chr12 12218502 12218521 19
Deletion Chr8 12861463 12861464 1
Deletion Chr6 14576716 14576721 5
Deletion Chr6 15896243 15896245 2
Deletion Chr12 17021919 17021923 4
Deletion Chr1 17768004 17768032 28
Deletion Chr12 18461634 18461635 1
Deletion Chr5 20170742 20170746 4
Deletion Chr6 20632026 20632029 3
Deletion Chr3 22727001 22814000 86999 4
Deletion Chr2 25308290 25308300 10
Deletion Chr6 27735255 27735265 10
Deletion Chr8 28603747 28603755 8
Deletion Chr11 28975656 28975674 18

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1380233 1380236 2
Insertion Chr1 17669550 17669552 1
Insertion Chr6 2610602 2610607 4
Insertion Chr8 2607271 2607274 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 14704824 14831687
Inversion Chr7 14704834 14831691
Inversion Chr3 22729743 22856234 OsKitaake03g247100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	27695687	T-A	Hetero	INTRON
SBS	Chr2	36726156	C-G	Homo	UTR_3_PRIME
SBS	Chr3	6386768	G-C	Hetero	INTERGENIC
SBS	Chr3	8210676	A-T	Hetero	INTERGENIC
SBS	Chr3	8210677	A-T	Hetero	INTERGENIC
SBS	Chr4	5427928	C-T	Hetero	INTERGENIC
SBS	Chr4	7354583	C-A	Hetero	INTERGENIC
SBS	Chr4	22370220	G-C	Hetero	INTERGENIC
SBS	Chr5	1860127	C-T	Homo	INTERGENIC
SBS	Chr6	2128062	G-A	Hetero	INTRON
SBS	Chr6	6183669	A-G	Hetero	INTERGENIC
SBS	Chr6	11427885	A-C	Hetero	INTERGENIC
SBS	Chr6	20630559	A-G	Hetero	INTERGENIC
SBS	Chr6	31019713	G-A	Hetero	#VALUE!
SBS	Chr7	28209822	G-A	Homo	INTERGENIC
SBS	Chr7	29385069	A-T	Homo	INTERGENIC
SBS	Chr8	1333851	C-T	Hetero	INTERGENIC
SBS	Chr8	16152819	C-T	Hetero	INTERGENIC
SBS	Chr9	10769403	C-T	Hetero	INTERGENIC
SBS	Chr10	20997491	C-T	Homo	INTRON
SBS	Chr10	22795352	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g189500
SBS	Chr11	18053142	G-T	Homo	INTERGENIC
SBS	Chr11	19030041	A-T	Homo	INTERGENIC
SBS	Chr12	2639926	A-G	Homo	INTERGENIC
SBS	Chr12	23211472	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1700686	1700693	7
Deletion	Chr9	5062038	5062047	9
Deletion	Chr8	7784174	7784176	2
Deletion	Chr4	7852943	7852956	13
Deletion	Chr6	8440169	8440170	1
Deletion	Chr1	10346148	10346149	1
Deletion	Chr12	12218502	12218521	19
Deletion	Chr8	12861463	12861464	1
Deletion	Chr6	14576716	14576721	5
Deletion	Chr6	15896243	15896245	2
Deletion	Chr12	17021919	17021923	4
Deletion	Chr1	17768004	17768032	28
Deletion	Chr12	18461634	18461635	1
Deletion	Chr5	20170742	20170746	4
Deletion	Chr6	20632026	20632029	3
Deletion	Chr3	22727001	22814000	86999	4
Deletion	Chr2	25308290	25308300	10
Deletion	Chr6	27735255	27735265	10
Deletion	Chr8	28603747	28603755	8
Deletion	Chr11	28975656	28975674	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	14704824	14831687
Inversion	Chr7	14704834	14831691
Inversion	Chr3	22729743	22856234	OsKitaake03g247100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes