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Mutant Information

Mutant Name	FN3273-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3273-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2465471 A-G Hetero INTERGENIC
SBS Chr1 2743767 A-T Hetero INTERGENIC
SBS Chr1 6442913 C-A Hetero INTERGENIC
SBS Chr1 8310318 T-A Hetero INTERGENIC
SBS Chr1 15544161 G-A Hetero INTERGENIC
SBS Chr1 29234714 G-A Hetero INTERGENIC
SBS Chr1 44051534 A-T Hetero INTERGENIC
SBS Chr2 13208105 G-T Hetero INTERGENIC
SBS Chr2 13938495 G-A Hetero INTERGENIC
SBS Chr2 18574000 C-T Hetero INTERGENIC
SBS Chr3 3901918 C-T Hetero INTERGENIC
SBS Chr3 3901920 C-T Hetero INTERGENIC
SBS Chr3 8962933 A-T Homo INTERGENIC
SBS Chr3 14255903 C-T Hetero INTERGENIC
SBS Chr3 14275584 A-T Hetero INTRON
SBS Chr3 16520251 T-C Hetero INTERGENIC
SBS Chr3 29836358 C-T Homo INTERGENIC
SBS Chr4 4354710 C-T Hetero INTERGENIC
SBS Chr4 4439669 A-G Homo INTERGENIC
SBS Chr4 4772018 C-T Hetero INTERGENIC
SBS Chr4 17421806 A-C Homo SYNONYMOUS_CODING
SBS Chr4 30098833 T-C Hetero INTERGENIC
SBS Chr4 30515104 T-C Hetero INTERGENIC
SBS Chr5 2246061 A-C Hetero INTERGENIC
SBS Chr5 6891399 A-C Hetero INTERGENIC
SBS Chr5 17130224 T-C Hetero INTERGENIC
SBS Chr5 23419672 C-A Hetero INTRON
SBS Chr5 23419673 T-C Hetero INTRON
SBS Chr6 1203381 A-C Hetero INTERGENIC
SBS Chr6 3186865 A-G Hetero INTRON
SBS Chr6 4950339 T-G Hetero INTERGENIC
SBS Chr6 8145776 T-C Hetero INTERGENIC
SBS Chr6 12900761 C-T Homo INTERGENIC
SBS Chr6 15504182 G-C Homo INTRON
SBS Chr6 18705648 G-T Hetero INTERGENIC
SBS Chr6 25570823 T-C Hetero SPLICE_SITE_REGION
SBS Chr6 25778386 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g229200
SBS Chr6 29178838 G-T Hetero INTRON
SBS Chr6 29178839 C-T Hetero INTRON
SBS Chr6 30025560 G-T Hetero INTRON
SBS Chr6 30714943 A-G Hetero INTERGENIC
SBS Chr8 4086885 G-A Homo INTERGENIC
SBS Chr8 20078034 G-A Homo INTERGENIC
SBS Chr8 23740434 C-G Hetero INTERGENIC
SBS Chr9 12061254 C-T Hetero UTR_5_PRIME
SBS Chr10 12903354 C-T Homo INTERGENIC
SBS Chr10 22218849 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g181200
SBS Chr11 7297608 C-T Hetero INTERGENIC
SBS Chr11 10648271 A-G Hetero INTRON
SBS Chr11 23694885 A-T Hetero INTERGENIC
SBS Chr12 631565 G-T Homo INTERGENIC
SBS Chr12 6827271 C-G Homo INTRON
SBS Chr12 25843219 T-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 870971 870978 7
Deletion Chr7 2768868 2768880 12
Deletion Chr3 3255217 3255221 4
Deletion Chr3 3842001 3863000 20999 8
Deletion Chr4 4249668 4249676 8
Deletion Chr4 4436658 4436671 13
Deletion Chr10 5359050 5359055 5
Deletion Chr11 6297460 6297466 6
Deletion Chr11 11095524 11095526 2
Deletion Chr1 11859913 11859921 8 OsKitaake01g145900
Deletion Chr4 14027332 14027343 11
Deletion Chr5 14568567 14568584 17
Deletion Chr11 15326576 15326584 8
Deletion Chr12 18377064 18377066 2
Deletion Chr8 24958976 24958977 1
Deletion Chr8 26413880 26414025 145
Deletion Chr3 27050432 27050437 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2435481 2435484 2
Insertion Chr5 18252507 18252510 2
Insertion Chr6 13730262 13730265 2
Insertion Chr7 8575085 8575088 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 25223388 25265614 OsKitaake07g228200
Inversion Chr7 25223552 25265621 OsKitaake07g228200
Inversion Chr11 26297257 26995986 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 17890239 Chr1 2741106 2
Translocation Chr10 17891032 Chr1 2741103 OsKitaake01g034500
Translocation Chr9 20736846 Chr2 10451993 OsKitaake09g176200
Translocation Chr9 20736852 Chr2 10447573 OsKitaake09g176200
Translocation Chr11 26995993 Chr1 7734123 OsKitaake11g219550

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2465471	A-G	Hetero	INTERGENIC
SBS	Chr1	2743767	A-T	Hetero	INTERGENIC
SBS	Chr1	6442913	C-A	Hetero	INTERGENIC
SBS	Chr1	8310318	T-A	Hetero	INTERGENIC
SBS	Chr1	15544161	G-A	Hetero	INTERGENIC
SBS	Chr1	29234714	G-A	Hetero	INTERGENIC
SBS	Chr1	44051534	A-T	Hetero	INTERGENIC
SBS	Chr2	13208105	G-T	Hetero	INTERGENIC
SBS	Chr2	13938495	G-A	Hetero	INTERGENIC
SBS	Chr2	18574000	C-T	Hetero	INTERGENIC
SBS	Chr3	3901918	C-T	Hetero	INTERGENIC
SBS	Chr3	3901920	C-T	Hetero	INTERGENIC
SBS	Chr3	8962933	A-T	Homo	INTERGENIC
SBS	Chr3	14255903	C-T	Hetero	INTERGENIC
SBS	Chr3	14275584	A-T	Hetero	INTRON
SBS	Chr3	16520251	T-C	Hetero	INTERGENIC
SBS	Chr3	29836358	C-T	Homo	INTERGENIC
SBS	Chr4	4354710	C-T	Hetero	INTERGENIC
SBS	Chr4	4439669	A-G	Homo	INTERGENIC
SBS	Chr4	4772018	C-T	Hetero	INTERGENIC
SBS	Chr4	17421806	A-C	Homo	SYNONYMOUS_CODING
SBS	Chr4	30098833	T-C	Hetero	INTERGENIC
SBS	Chr4	30515104	T-C	Hetero	INTERGENIC
SBS	Chr5	2246061	A-C	Hetero	INTERGENIC
SBS	Chr5	6891399	A-C	Hetero	INTERGENIC
SBS	Chr5	17130224	T-C	Hetero	INTERGENIC
SBS	Chr5	23419672	C-A	Hetero	INTRON
SBS	Chr5	23419673	T-C	Hetero	INTRON
SBS	Chr6	1203381	A-C	Hetero	INTERGENIC
SBS	Chr6	3186865	A-G	Hetero	INTRON
SBS	Chr6	4950339	T-G	Hetero	INTERGENIC
SBS	Chr6	8145776	T-C	Hetero	INTERGENIC
SBS	Chr6	12900761	C-T	Homo	INTERGENIC
SBS	Chr6	15504182	G-C	Homo	INTRON
SBS	Chr6	18705648	G-T	Hetero	INTERGENIC
SBS	Chr6	25570823	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr6	25778386	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g229200
SBS	Chr6	29178838	G-T	Hetero	INTRON
SBS	Chr6	29178839	C-T	Hetero	INTRON
SBS	Chr6	30025560	G-T	Hetero	INTRON
SBS	Chr6	30714943	A-G	Hetero	INTERGENIC
SBS	Chr8	4086885	G-A	Homo	INTERGENIC
SBS	Chr8	20078034	G-A	Homo	INTERGENIC
SBS	Chr8	23740434	C-G	Hetero	INTERGENIC
SBS	Chr9	12061254	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	12903354	C-T	Homo	INTERGENIC
SBS	Chr10	22218849	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g181200
SBS	Chr11	7297608	C-T	Hetero	INTERGENIC
SBS	Chr11	10648271	A-G	Hetero	INTRON
SBS	Chr11	23694885	A-T	Hetero	INTERGENIC
SBS	Chr12	631565	G-T	Homo	INTERGENIC
SBS	Chr12	6827271	C-G	Homo	INTRON
SBS	Chr12	25843219	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	870971	870978	7
Deletion	Chr7	2768868	2768880	12
Deletion	Chr3	3255217	3255221	4
Deletion	Chr3	3842001	3863000	20999	8
Deletion	Chr4	4249668	4249676	8
Deletion	Chr4	4436658	4436671	13
Deletion	Chr10	5359050	5359055	5
Deletion	Chr11	6297460	6297466	6
Deletion	Chr11	11095524	11095526	2
Deletion	Chr1	11859913	11859921	8	OsKitaake01g145900
Deletion	Chr4	14027332	14027343	11
Deletion	Chr5	14568567	14568584	17
Deletion	Chr11	15326576	15326584	8
Deletion	Chr12	18377064	18377066	2
Deletion	Chr8	24958976	24958977	1
Deletion	Chr8	26413880	26414025	145
Deletion	Chr3	27050432	27050437	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	25223388	25265614	OsKitaake07g228200
Inversion	Chr7	25223552	25265621	OsKitaake07g228200
Inversion	Chr11	26297257	26995986	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes