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Mutant Information

Mutant Name	FN3276-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3276-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1915724 A-G Hetero INTERGENIC
SBS Chr1 14128287 G-C Hetero INTERGENIC
SBS Chr1 17732231 C-A Homo INTERGENIC
SBS Chr2 3374572 G-A Homo INTRON
SBS Chr2 3862592 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g055600
SBS Chr2 5248927 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 15764734 T-C Hetero INTERGENIC
SBS Chr2 20478143 T-A Hetero INTERGENIC
SBS Chr2 22960389 T-A Hetero INTERGENIC
SBS Chr2 24877545 A-T Homo INTERGENIC
SBS Chr2 32541102 G-A Homo INTERGENIC
SBS Chr2 32819309 A-G Hetero INTERGENIC
SBS Chr3 24978193 C-T Hetero INTERGENIC
SBS Chr4 806933 C-G Homo INTERGENIC
SBS Chr4 2536381 A-T Homo INTERGENIC
SBS Chr4 2536382 A-T Homo INTERGENIC
SBS Chr4 2536383 G-A Homo INTERGENIC
SBS Chr4 20187028 C-T Homo INTERGENIC
SBS Chr4 20247735 C-G Homo INTRON
SBS Chr4 34290125 G-T Hetero INTERGENIC
SBS Chr5 10960836 C-T Hetero INTERGENIC
SBS Chr5 30087411 G-A Hetero INTERGENIC
SBS Chr6 12710020 C-T Hetero INTRON
SBS Chr6 18207235 T-C Homo INTERGENIC
SBS Chr7 18934031 A-G Homo INTERGENIC
SBS Chr7 28400724 C-T Homo INTERGENIC
SBS Chr8 23392480 C-T Hetero INTRON
SBS Chr8 25628573 G-T Hetero INTERGENIC
SBS Chr8 26910539 A-T Hetero SYNONYMOUS_CODING
SBS Chr8 28794139 A-G Hetero INTERGENIC
SBS Chr9 1747780 C-T Hetero INTERGENIC
SBS Chr9 10108272 C-T Homo INTERGENIC
SBS Chr10 574387 C-T Hetero INTERGENIC
SBS Chr10 2641546 G-A Hetero INTERGENIC
SBS Chr10 22320311 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g182766
SBS Chr11 19657584 A-C Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1212441 1212449 8
Deletion Chr4 3406862 3406882 20
Deletion Chr4 5860752 5860754 2
Deletion Chr1 9507202 9507209 7
Deletion Chr2 10266413 10266415 2
Deletion Chr7 11922796 11922807 11
Deletion Chr6 15756872 15757027 155
Deletion Chr6 18069621 18069622 1
Deletion Chr7 19281917 19281918 1
Deletion Chr9 22398459 22398467 8
Deletion Chr6 22998690 22998693 3
Deletion Chr8 27257524 27257526 2
Deletion Chr2 32301001 32399000 97999 16

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22084898 22084901 2
Insertion Chr7 10622903 10622906 2
Insertion Chr8 5255130 5255136 5

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16475252 16783721 OsKitaake06g158400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12939829 Chr6 16783728 OsKitaake06g158400
Translocation Chr11 12940466 Chr5 23827399 OsKitaake05g209350
Translocation Chr6 16475547 Chr5 23880873
Translocation Chr9 21199910 Chr6 16475542
Translocation Chr9 21199915 Chr6 16475253

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1915724	A-G	Hetero	INTERGENIC
SBS	Chr1	14128287	G-C	Hetero	INTERGENIC
SBS	Chr1	17732231	C-A	Homo	INTERGENIC
SBS	Chr2	3374572	G-A	Homo	INTRON
SBS	Chr2	3862592	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g055600
SBS	Chr2	5248927	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	15764734	T-C	Hetero	INTERGENIC
SBS	Chr2	20478143	T-A	Hetero	INTERGENIC
SBS	Chr2	22960389	T-A	Hetero	INTERGENIC
SBS	Chr2	24877545	A-T	Homo	INTERGENIC
SBS	Chr2	32541102	G-A	Homo	INTERGENIC
SBS	Chr2	32819309	A-G	Hetero	INTERGENIC
SBS	Chr3	24978193	C-T	Hetero	INTERGENIC
SBS	Chr4	806933	C-G	Homo	INTERGENIC
SBS	Chr4	2536381	A-T	Homo	INTERGENIC
SBS	Chr4	2536382	A-T	Homo	INTERGENIC
SBS	Chr4	2536383	G-A	Homo	INTERGENIC
SBS	Chr4	20187028	C-T	Homo	INTERGENIC
SBS	Chr4	20247735	C-G	Homo	INTRON
SBS	Chr4	34290125	G-T	Hetero	INTERGENIC
SBS	Chr5	10960836	C-T	Hetero	INTERGENIC
SBS	Chr5	30087411	G-A	Hetero	INTERGENIC
SBS	Chr6	12710020	C-T	Hetero	INTRON
SBS	Chr6	18207235	T-C	Homo	INTERGENIC
SBS	Chr7	18934031	A-G	Homo	INTERGENIC
SBS	Chr7	28400724	C-T	Homo	INTERGENIC
SBS	Chr8	23392480	C-T	Hetero	INTRON
SBS	Chr8	25628573	G-T	Hetero	INTERGENIC
SBS	Chr8	26910539	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	28794139	A-G	Hetero	INTERGENIC
SBS	Chr9	1747780	C-T	Hetero	INTERGENIC
SBS	Chr9	10108272	C-T	Homo	INTERGENIC
SBS	Chr10	574387	C-T	Hetero	INTERGENIC
SBS	Chr10	2641546	G-A	Hetero	INTERGENIC
SBS	Chr10	22320311	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g182766
SBS	Chr11	19657584	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1212441	1212449	8
Deletion	Chr4	3406862	3406882	20
Deletion	Chr4	5860752	5860754	2
Deletion	Chr1	9507202	9507209	7
Deletion	Chr2	10266413	10266415	2
Deletion	Chr7	11922796	11922807	11
Deletion	Chr6	15756872	15757027	155
Deletion	Chr6	18069621	18069622	1
Deletion	Chr7	19281917	19281918	1
Deletion	Chr9	22398459	22398467	8
Deletion	Chr6	22998690	22998693	3
Deletion	Chr8	27257524	27257526	2
Deletion	Chr2	32301001	32399000	97999	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16475252	16783721	OsKitaake06g158400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes