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| Mutant Information |
|---|
| Mutant Name | FN3278-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3278-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12263448 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 12263449 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 30681000 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 13796610 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18061725 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21493031 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11320474 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30414102 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 2588780 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 949934 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 1956188 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12437368 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4226299 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 6713317 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 13591017 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 16818451 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25762764 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13889014 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19615439 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g159600 |
| SBS | Chr7 | 21820918 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 17572895 | G-T | Hetero | INTRON | |
| SBS | Chr9 | 17909079 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 8457890 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 12857605 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1272748 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2425462 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 9765332 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22083767 | A-T | Hetero | INTERGENIC |
Deletions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 388001 | 439000 | 50999 | 8 |
| Deletion | Chr11 | 17058362 | 17058425 | 63 | OsKitaake11g133400 |
| Deletion | Chr4 | 19429001 | 19453000 | 23999 | 2 |
| Deletion | Chr4 | 25982925 | 25982932 | 7 | |
| Deletion | Chr4 | 31010507 | 31010511 | 4 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 17910836 | 17910840 | 3 | OsKitaake09g136550  |
| Insertion | Chr9 | 10068067 | 10068069 | 1 | |
| Insertion | Chr11 | 8637653 | 8637728 | 74 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 758717 | 857036 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 758685 | Chr4 | 5087676 | 2 |
| Translocation | Chr6 | 14149811 | Chr1 | 8884899 | OsKitaake06g146600 |
| Translocation | Chr6 | 14151111 | Chr1 | 8884896 |