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Mutant Information

Mutant Name	FN3279-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3279-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 37255158 G-A Hetero INTERGENIC
SBS Chr1 38160978 A-T Homo INTERGENIC
SBS Chr1 42850476 T-A Hetero INTERGENIC
SBS Chr2 8220176 A-T Hetero INTRON
SBS Chr2 10108116 C-T Hetero INTERGENIC
SBS Chr2 13194304 T-C Hetero INTERGENIC
SBS Chr2 18218407 T-A Hetero INTERGENIC
SBS Chr2 18801894 A-C Hetero INTERGENIC
SBS Chr2 29788789 A-C Homo INTERGENIC
SBS Chr2 35490145 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g372700
SBS Chr2 35495434 C-A Hetero INTERGENIC
SBS Chr3 16647613 A-G Hetero INTERGENIC
SBS Chr3 22472376 C-T Hetero INTERGENIC
SBS Chr3 31960901 T-A Hetero INTRON
SBS Chr4 3176489 T-G Homo INTRON
SBS Chr4 5681121 G-A Hetero INTERGENIC
SBS Chr4 13696598 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g066200
SBS Chr4 18528804 T-A Hetero INTERGENIC
SBS Chr4 26726557 C-T Hetero INTERGENIC
SBS Chr4 27221432 G-A Homo INTERGENIC
SBS Chr5 629773 T-C Hetero UTR_5_PRIME
SBS Chr5 629776 G-A Hetero UTR_5_PRIME
SBS Chr5 9032813 C-T Homo INTERGENIC
SBS Chr5 9748126 C-T Hetero INTERGENIC
SBS Chr5 11691240 G-A Hetero INTRON
SBS Chr5 20223374 G-A Homo INTERGENIC
SBS Chr5 21741192 G-A Homo INTRON
SBS Chr5 30110180 T-A Homo INTERGENIC
SBS Chr7 2479089 C-T Hetero INTERGENIC
SBS Chr8 7909992 A-C Homo INTERGENIC
SBS Chr8 7909994 G-A Homo INTERGENIC
SBS Chr8 9251792 C-T Homo INTERGENIC
SBS Chr9 6474292 T-C Hetero INTERGENIC
SBS Chr9 6479238 C-T Hetero INTERGENIC
SBS Chr9 12409597 C-A Hetero INTERGENIC
SBS Chr9 12993710 G-T Hetero INTERGENIC
SBS Chr10 1033047 C-G Hetero INTERGENIC
SBS Chr10 8591243 A-G Hetero INTERGENIC
SBS Chr10 9250571 C-T Hetero INTERGENIC
SBS Chr10 10503940 G-A Hetero UTR_3_PRIME
SBS Chr10 11954927 A-G Hetero INTERGENIC
SBS Chr10 12030248 C-G Hetero INTERGENIC
SBS Chr10 12923812 A-C Hetero INTERGENIC
SBS Chr11 10804561 C-G Hetero INTERGENIC
SBS Chr12 5753201 C-A Hetero STOP_GAINED OsKitaake12g069800
SBS Chr12 6281477 C-T Hetero INTERGENIC
SBS Chr12 6481043 C-G Hetero INTRON
SBS Chr12 16743184 C-A Hetero INTERGENIC
SBS Chr12 19874436 T-C Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 771732 771736 4
Deletion Chr1 2930852 2930854 2
Deletion Chr1 7139455 7139466 11
Deletion Chr5 10981368 10981371 3
Deletion Chr4 11283285 11283286 1
Deletion Chr12 12592001 12617000 24999 5
Deletion Chr7 13721001 13729000 7999
Deletion Chr12 18088001 18121000 32999
Deletion Chr8 18609608 18609611 3
Deletion Chr8 20227506 20227518 12
Deletion Chr1 25535087 25535089 2
Deletion Chr8 26354001 26367000 12999 2
Deletion Chr7 28564685 28564687 2
Deletion Chr5 29782025 29782036 11
Deletion Chr2 31609654 31609659 5
Deletion Chr2 33197001 33235000 37999 8

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 15282489 15282491 1
Insertion Chr9 22665767 22665770 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 3806101 4030381
Inversion Chr5 6896079 7266388 OsKitaake05g072800
Inversion Chr5 6896084 7266388 OsKitaake05g072800

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 2457987 Chr2 28263477

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	37255158	G-A	Hetero	INTERGENIC
SBS	Chr1	38160978	A-T	Homo	INTERGENIC
SBS	Chr1	42850476	T-A	Hetero	INTERGENIC
SBS	Chr2	8220176	A-T	Hetero	INTRON
SBS	Chr2	10108116	C-T	Hetero	INTERGENIC
SBS	Chr2	13194304	T-C	Hetero	INTERGENIC
SBS	Chr2	18218407	T-A	Hetero	INTERGENIC
SBS	Chr2	18801894	A-C	Hetero	INTERGENIC
SBS	Chr2	29788789	A-C	Homo	INTERGENIC
SBS	Chr2	35490145	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g372700
SBS	Chr2	35495434	C-A	Hetero	INTERGENIC
SBS	Chr3	16647613	A-G	Hetero	INTERGENIC
SBS	Chr3	22472376	C-T	Hetero	INTERGENIC
SBS	Chr3	31960901	T-A	Hetero	INTRON
SBS	Chr4	3176489	T-G	Homo	INTRON
SBS	Chr4	5681121	G-A	Hetero	INTERGENIC
SBS	Chr4	13696598	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g066200
SBS	Chr4	18528804	T-A	Hetero	INTERGENIC
SBS	Chr4	26726557	C-T	Hetero	INTERGENIC
SBS	Chr4	27221432	G-A	Homo	INTERGENIC
SBS	Chr5	629773	T-C	Hetero	UTR_5_PRIME
SBS	Chr5	629776	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	9032813	C-T	Homo	INTERGENIC
SBS	Chr5	9748126	C-T	Hetero	INTERGENIC
SBS	Chr5	11691240	G-A	Hetero	INTRON
SBS	Chr5	20223374	G-A	Homo	INTERGENIC
SBS	Chr5	21741192	G-A	Homo	INTRON
SBS	Chr5	30110180	T-A	Homo	INTERGENIC
SBS	Chr7	2479089	C-T	Hetero	INTERGENIC
SBS	Chr8	7909992	A-C	Homo	INTERGENIC
SBS	Chr8	7909994	G-A	Homo	INTERGENIC
SBS	Chr8	9251792	C-T	Homo	INTERGENIC
SBS	Chr9	6474292	T-C	Hetero	INTERGENIC
SBS	Chr9	6479238	C-T	Hetero	INTERGENIC
SBS	Chr9	12409597	C-A	Hetero	INTERGENIC
SBS	Chr9	12993710	G-T	Hetero	INTERGENIC
SBS	Chr10	1033047	C-G	Hetero	INTERGENIC
SBS	Chr10	8591243	A-G	Hetero	INTERGENIC
SBS	Chr10	9250571	C-T	Hetero	INTERGENIC
SBS	Chr10	10503940	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	11954927	A-G	Hetero	INTERGENIC
SBS	Chr10	12030248	C-G	Hetero	INTERGENIC
SBS	Chr10	12923812	A-C	Hetero	INTERGENIC
SBS	Chr11	10804561	C-G	Hetero	INTERGENIC
SBS	Chr12	5753201	C-A	Hetero	STOP_GAINED	OsKitaake12g069800
SBS	Chr12	6281477	C-T	Hetero	INTERGENIC
SBS	Chr12	6481043	C-G	Hetero	INTRON
SBS	Chr12	16743184	C-A	Hetero	INTERGENIC
SBS	Chr12	19874436	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	771732	771736	4
Deletion	Chr1	2930852	2930854	2
Deletion	Chr1	7139455	7139466	11
Deletion	Chr5	10981368	10981371	3
Deletion	Chr4	11283285	11283286	1
Deletion	Chr12	12592001	12617000	24999	5
Deletion	Chr7	13721001	13729000	7999
Deletion	Chr12	18088001	18121000	32999
Deletion	Chr8	18609608	18609611	3
Deletion	Chr8	20227506	20227518	12
Deletion	Chr1	25535087	25535089	2
Deletion	Chr8	26354001	26367000	12999	2
Deletion	Chr7	28564685	28564687	2
Deletion	Chr5	29782025	29782036	11
Deletion	Chr2	31609654	31609659	5
Deletion	Chr2	33197001	33235000	37999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	3806101	4030381
Inversion	Chr5	6896079	7266388	OsKitaake05g072800
Inversion	Chr5	6896084	7266388	OsKitaake05g072800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes