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Mutant Information

Mutant Name	FN3280-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3280-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15832429 A-T Hetero INTRON
SBS Chr1 35964852 G-C Hetero INTERGENIC
SBS Chr1 40382368 C-A Hetero INTERGENIC
SBS Chr2 21807750 C-T Hetero UTR_3_PRIME
SBS Chr2 31091243 C-T Homo INTRON
SBS Chr4 5773794 C-G Hetero INTERGENIC
SBS Chr4 5894839 C-T Hetero INTERGENIC
SBS Chr4 15530268 C-T Hetero INTERGENIC
SBS Chr4 32531051 T-A Hetero INTERGENIC
SBS Chr5 6806364 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g068500
SBS Chr5 8231531 C-T Hetero INTERGENIC
SBS Chr5 24594485 C-A Hetero INTRON
SBS Chr5 27184880 A-G Hetero INTRON
SBS Chr6 11584917 G-A Homo INTERGENIC
SBS Chr7 1776316 C-G Hetero INTRON
SBS Chr7 22713738 G-A Homo INTERGENIC
SBS Chr7 29023063 T-A Homo INTERGENIC
SBS Chr8 5264257 G-A Hetero INTERGENIC
SBS Chr8 12751049 C-G Hetero INTERGENIC
SBS Chr8 16507060 G-A Hetero INTERGENIC
SBS Chr8 16835473 A-T Hetero INTERGENIC
SBS Chr8 21552634 G-T Hetero INTERGENIC
SBS Chr9 1968638 G-A Homo INTERGENIC
SBS Chr9 9879432 C-A Hetero INTERGENIC
SBS Chr9 11382510 C-A Homo INTERGENIC
SBS Chr9 16549689 C-A Hetero UTR_3_PRIME
SBS Chr9 16549690 G-T Hetero UTR_3_PRIME
SBS Chr10 609045 C-T Hetero INTERGENIC
SBS Chr10 3404612 G-C Hetero INTERGENIC
SBS Chr12 5881510 G-A Hetero INTERGENIC
SBS Chr12 5922292 C-A Hetero INTERGENIC
SBS Chr12 6467986 C-G Hetero INTERGENIC
SBS Chr12 9905911 G-T Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 13906001 13913000 6999 OsKitaake03g183300
Deletion Chr9 16523180 16523191 11
Deletion Chr7 17052049 17052050 1
Deletion Chr6 22032691 22032700 9
Deletion Chr6 23033833 23033967 134
Deletion Chr4 23873001 23954000 80999 2
Deletion Chr4 23962001 24124000 161999 33
Deletion Chr8 27770196 27770197 1 OsKitaake08g230100
Deletion Chr2 28095389 28095394 5
Deletion Chr7 28752768 28752775 7
Deletion Chr3 36533716 36533720 4

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8201142 8201145 2
Insertion Chr1 25535087 25535090 2
Insertion Chr1 37179825 37179827 1
Insertion Chr1 41466522 41466527 4
Insertion Chr2 34477916 34477918 1
Insertion Chr4 22036910 22036914 3
Insertion Chr4 25671153 25671156 2
Insertion Chr6 2337668 2337672 3
Insertion Chr6 16507729 16507732 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 32823477 33009783 OsKitaake01g336700

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13626063 Chr2 2834059 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15832429	A-T	Hetero	INTRON
SBS	Chr1	35964852	G-C	Hetero	INTERGENIC
SBS	Chr1	40382368	C-A	Hetero	INTERGENIC
SBS	Chr2	21807750	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	31091243	C-T	Homo	INTRON
SBS	Chr4	5773794	C-G	Hetero	INTERGENIC
SBS	Chr4	5894839	C-T	Hetero	INTERGENIC
SBS	Chr4	15530268	C-T	Hetero	INTERGENIC
SBS	Chr4	32531051	T-A	Hetero	INTERGENIC
SBS	Chr5	6806364	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g068500
SBS	Chr5	8231531	C-T	Hetero	INTERGENIC
SBS	Chr5	24594485	C-A	Hetero	INTRON
SBS	Chr5	27184880	A-G	Hetero	INTRON
SBS	Chr6	11584917	G-A	Homo	INTERGENIC
SBS	Chr7	1776316	C-G	Hetero	INTRON
SBS	Chr7	22713738	G-A	Homo	INTERGENIC
SBS	Chr7	29023063	T-A	Homo	INTERGENIC
SBS	Chr8	5264257	G-A	Hetero	INTERGENIC
SBS	Chr8	12751049	C-G	Hetero	INTERGENIC
SBS	Chr8	16507060	G-A	Hetero	INTERGENIC
SBS	Chr8	16835473	A-T	Hetero	INTERGENIC
SBS	Chr8	21552634	G-T	Hetero	INTERGENIC
SBS	Chr9	1968638	G-A	Homo	INTERGENIC
SBS	Chr9	9879432	C-A	Hetero	INTERGENIC
SBS	Chr9	11382510	C-A	Homo	INTERGENIC
SBS	Chr9	16549689	C-A	Hetero	UTR_3_PRIME
SBS	Chr9	16549690	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	609045	C-T	Hetero	INTERGENIC
SBS	Chr10	3404612	G-C	Hetero	INTERGENIC
SBS	Chr12	5881510	G-A	Hetero	INTERGENIC
SBS	Chr12	5922292	C-A	Hetero	INTERGENIC
SBS	Chr12	6467986	C-G	Hetero	INTERGENIC
SBS	Chr12	9905911	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	13906001	13913000	6999	OsKitaake03g183300
Deletion	Chr9	16523180	16523191	11
Deletion	Chr7	17052049	17052050	1
Deletion	Chr6	22032691	22032700	9
Deletion	Chr6	23033833	23033967	134
Deletion	Chr4	23873001	23954000	80999	2
Deletion	Chr4	23962001	24124000	161999	33
Deletion	Chr8	27770196	27770197	1	OsKitaake08g230100
Deletion	Chr2	28095389	28095394	5
Deletion	Chr7	28752768	28752775	7
Deletion	Chr3	36533716	36533720	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	32823477	33009783	OsKitaake01g336700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes