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Mutant Information

Mutant Name	FN3282-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3282-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7626303 G-A Hetero INTERGENIC
SBS Chr1 10337028 T-C Hetero INTERGENIC
SBS Chr1 33396065 A-G Homo INTERGENIC
SBS Chr1 35016413 A-G Homo INTERGENIC
SBS Chr1 43335007 A-T Homo INTERGENIC
SBS Chr2 1020272 G-A Homo UTR_3_PRIME
SBS Chr2 4771120 C-A Homo NON_SYNONYMOUS_CODING OsKitaake02g066000
SBS Chr2 10905500 T-A Homo NON_SYNONYMOUS_CODING OsKitaake02g127500
SBS Chr2 10905501 C-A Homo STOP_GAINED OsKitaake02g127500
SBS Chr2 24158699 C-T Hetero INTERGENIC
SBS Chr2 35390078 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g371100
SBS Chr3 272955 T-A Hetero INTERGENIC
SBS Chr3 3490274 A-T Hetero INTERGENIC
SBS Chr4 7327802 C-T Hetero INTERGENIC
SBS Chr4 14656062 G-A Hetero INTERGENIC
SBS Chr4 27924525 A-T Hetero INTERGENIC
SBS Chr4 36773861 A-G Hetero INTERGENIC
SBS Chr5 3467910 T-C Hetero INTERGENIC
SBS Chr5 7240975 T-C Hetero INTERGENIC
SBS Chr5 8985111 C-G Hetero INTERGENIC
SBS Chr5 10151675 C-G Hetero INTERGENIC
SBS Chr5 10246901 T-C Hetero INTERGENIC
SBS Chr5 16756200 A-T Hetero INTERGENIC
SBS Chr5 17267392 G-A Homo INTERGENIC
SBS Chr5 18759543 G-A Hetero INTERGENIC
SBS Chr6 16965949 T-A Homo INTRON
SBS Chr6 30992231 G-A Hetero INTERGENIC
SBS Chr7 17883118 G-T Hetero INTERGENIC
SBS Chr7 23942398 C-A Hetero INTERGENIC
SBS Chr8 49895 C-T Hetero INTRON
SBS Chr8 10646596 C-G Homo INTERGENIC
SBS Chr8 12152641 T-C Homo INTERGENIC
SBS Chr8 27313673 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 7354534 G-T Hetero INTRON
SBS Chr10 9637805 A-G Hetero INTERGENIC
SBS Chr10 13023730 G-C Hetero INTERGENIC
SBS Chr10 13023731 C-A Hetero INTERGENIC
SBS Chr11 10507731 G-T Hetero INTRON
SBS Chr11 11606877 A-T Hetero INTERGENIC
SBS Chr12 451996 T-C Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 4515537 4515542 5
Deletion Chr1 9854001 10034000 179999 21
Deletion Chr8 11616474 11616475 1
Deletion Chr5 13536906 13536908 2
Deletion Chr9 13773261 13773270 9
Deletion Chr7 15528413 15528417 4
Deletion Chr6 16676265 16676267 2
Deletion Chr6 18596269 18596273 4
Deletion Chr4 21737238 21737242 4
Deletion Chr6 26624884 26624892 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5460621 5460625 3
Insertion Chr2 1570596 1570598 1
Insertion Chr2 28849671 28849673 1
Insertion Chr12 11700973 11700975 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 3751747 3761192
Inversion Chr4 3761196 3915296
Inversion Chr1 9718029 10353584
Inversion Chr1 9719527 10032625

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 22103664 Chr2 36049159 2
Translocation Chr4 22107109 Chr2 36049158 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7626303	G-A	Hetero	INTERGENIC
SBS	Chr1	10337028	T-C	Hetero	INTERGENIC
SBS	Chr1	33396065	A-G	Homo	INTERGENIC
SBS	Chr1	35016413	A-G	Homo	INTERGENIC
SBS	Chr1	43335007	A-T	Homo	INTERGENIC
SBS	Chr2	1020272	G-A	Homo	UTR_3_PRIME
SBS	Chr2	4771120	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g066000
SBS	Chr2	10905500	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g127500
SBS	Chr2	10905501	C-A	Homo	STOP_GAINED	OsKitaake02g127500
SBS	Chr2	24158699	C-T	Hetero	INTERGENIC
SBS	Chr2	35390078	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g371100
SBS	Chr3	272955	T-A	Hetero	INTERGENIC
SBS	Chr3	3490274	A-T	Hetero	INTERGENIC
SBS	Chr4	7327802	C-T	Hetero	INTERGENIC
SBS	Chr4	14656062	G-A	Hetero	INTERGENIC
SBS	Chr4	27924525	A-T	Hetero	INTERGENIC
SBS	Chr4	36773861	A-G	Hetero	INTERGENIC
SBS	Chr5	3467910	T-C	Hetero	INTERGENIC
SBS	Chr5	7240975	T-C	Hetero	INTERGENIC
SBS	Chr5	8985111	C-G	Hetero	INTERGENIC
SBS	Chr5	10151675	C-G	Hetero	INTERGENIC
SBS	Chr5	10246901	T-C	Hetero	INTERGENIC
SBS	Chr5	16756200	A-T	Hetero	INTERGENIC
SBS	Chr5	17267392	G-A	Homo	INTERGENIC
SBS	Chr5	18759543	G-A	Hetero	INTERGENIC
SBS	Chr6	16965949	T-A	Homo	INTRON
SBS	Chr6	30992231	G-A	Hetero	INTERGENIC
SBS	Chr7	17883118	G-T	Hetero	INTERGENIC
SBS	Chr7	23942398	C-A	Hetero	INTERGENIC
SBS	Chr8	49895	C-T	Hetero	INTRON
SBS	Chr8	10646596	C-G	Homo	INTERGENIC
SBS	Chr8	12152641	T-C	Homo	INTERGENIC
SBS	Chr8	27313673	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	7354534	G-T	Hetero	INTRON
SBS	Chr10	9637805	A-G	Hetero	INTERGENIC
SBS	Chr10	13023730	G-C	Hetero	INTERGENIC
SBS	Chr10	13023731	C-A	Hetero	INTERGENIC
SBS	Chr11	10507731	G-T	Hetero	INTRON
SBS	Chr11	11606877	A-T	Hetero	INTERGENIC
SBS	Chr12	451996	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	4515537	4515542	5
Deletion	Chr1	9854001	10034000	179999	21
Deletion	Chr8	11616474	11616475	1
Deletion	Chr5	13536906	13536908	2
Deletion	Chr9	13773261	13773270	9
Deletion	Chr7	15528413	15528417	4
Deletion	Chr6	16676265	16676267	2
Deletion	Chr6	18596269	18596273	4
Deletion	Chr4	21737238	21737242	4
Deletion	Chr6	26624884	26624892	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3751747	3761192
Inversion	Chr4	3761196	3915296
Inversion	Chr1	9718029	10353584
Inversion	Chr1	9719527	10032625

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes