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| Mutant Information |
|---|
| Mutant Name | FN3283-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3283-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr3 | 2177891 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29731339 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 16384001 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 28978733 | T-A | Homo | INTRON | |
| SBS | Chr5 | 20832626 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 20832627 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20832628 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25357878 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 25179066 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 25179067 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26767513 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26767516 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 7392145 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 18212230 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 5334916 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 6952192 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9409797 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20389452 | A-G | Hetero | INTRON | |
| SBS | Chr9 | 20513616 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr10 | 16253570 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3917178 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11757996 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12367460 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 15621755 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g125600 |
| SBS | Chr11 | 15643416 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15680135 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15766914 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18837527 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27647614 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 2867292 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12592674 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19133162 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 19966433 | C-T | Homo | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 430772 | 430787 | 15 | |
| Deletion | Chr8 | 8083934 | 8083935 | 1 | |
| Deletion | Chr5 | 22606104 | 22606114 | 10 | |
| Deletion | Chr6 | 25369567 | 25369571 | 4 | |
| Deletion | Chr7 | 26683031 | 26683036 | 5 | |
| Deletion | Chr5 | 27136471 | 27136480 | 9 | |
| Deletion | Chr2 | 33136119 | 33136120 | 1 | |
| Deletion | Chr1 | 34457001 | 34672000 | 214999 | 46 |
| Deletion | Chr4 | 35212790 | 35212807 | 17 | OsKitaake04g296900 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6580280 | 6580283 | 2 | |
| Insertion | Chr11 | 5345278 | 5345280 | 1 | |
| Insertion | Chr11 | 12480143 | 12480153 | 9 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 38602188 | 38809976 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 17925135 | Chr7 | 19428125 | OsKitaake07g157500 |
| Translocation | Chr9 | 17931317 | Chr7 | 19428141 | OsKitaake07g157500 |