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Mutant Information

Mutant Name	FN3285-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3285-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24360058 C-A Hetero INTERGENIC
SBS Chr1 24360059 T-A Hetero INTERGENIC
SBS Chr1 37104789 A-G Hetero INTERGENIC
SBS Chr1 40021574 C-T Hetero UTR_5_PRIME
SBS Chr1 41224749 T-C Hetero INTRON
SBS Chr1 42378822 C-A Hetero INTERGENIC
SBS Chr2 8123293 A-G Hetero INTERGENIC
SBS Chr2 15558862 G-A Hetero INTERGENIC
SBS Chr3 271302 A-C Hetero INTERGENIC
SBS Chr3 735863 T-A Hetero INTERGENIC
SBS Chr3 11711734 C-T Homo INTERGENIC
SBS Chr3 15303427 C-T Homo INTERGENIC
SBS Chr3 26662650 C-T Hetero INTERGENIC
SBS Chr3 34120713 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 6159963 A-G Hetero INTERGENIC
SBS Chr4 22351407 G-A Homo INTERGENIC
SBS Chr4 33647998 G-T Homo NON_SYNONYMOUS_CODING OsKitaake04g278800
SBS Chr5 3926918 A-T Homo INTRON
SBS Chr5 12305658 C-T Homo INTERGENIC
SBS Chr5 19081983 G-A Hetero INTERGENIC
SBS Chr5 25878465 T-C Hetero INTRON
SBS Chr6 5604940 A-T Hetero INTRON
SBS Chr6 15450883 G-T Homo INTERGENIC
SBS Chr6 15450884 C-T Homo INTERGENIC
SBS Chr7 6124873 T-C Hetero INTERGENIC
SBS Chr7 29130719 G-A Hetero INTERGENIC
SBS Chr8 2483815 T-A Hetero INTERGENIC
SBS Chr8 5053930 G-C Hetero INTERGENIC
SBS Chr8 7023480 C-A Hetero INTERGENIC
SBS Chr8 11410804 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g101200
SBS Chr8 11410805 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g101200
SBS Chr8 11496802 G-A Hetero INTERGENIC
SBS Chr8 20413750 C-T Hetero INTERGENIC
SBS Chr8 28908020 G-A Hetero INTERGENIC
SBS Chr9 4002812 G-T Hetero INTERGENIC
SBS Chr9 6768805 T-G Hetero INTERGENIC
SBS Chr9 22454614 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g204000
SBS Chr10 11187433 C-G Hetero INTERGENIC
SBS Chr10 14815129 A-G Hetero INTERGENIC
SBS Chr10 17843229 A-T Hetero INTERGENIC
SBS Chr11 10166846 C-T Homo INTERGENIC
SBS Chr11 22646221 G-A Hetero INTRON
SBS Chr11 23264544 G-T Hetero INTERGENIC
SBS Chr11 24173898 G-A Hetero INTERGENIC
SBS Chr12 11275966 A-G Hetero INTERGENIC
SBS Chr12 13131925 A-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 7945752 7945753 1
Deletion Chr4 10032268 10032272 4
Deletion Chr3 11717919 11717921 2
Deletion Chr1 12841390 12841391 1 OsKitaake01g153100
Deletion Chr4 21913998 21914000 2
Deletion Chr5 22787292 22787298 6
Deletion Chr7 25591281 25591283 2
Deletion Chr12 25986295 25986297 2
Deletion Chr4 27777444 27777452 8
Deletion Chr8 28457455 28457456 1 OsKitaake08g241100

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21197580 21197583 2
Insertion Chr5 17458023 17458025 1
Insertion Chr5 20384411 20384414 2
Insertion Chr5 28863997 28864000 2
Insertion Chr8 3573141 3573145 3
Insertion Chr12 575285 575293 7
Insertion Chr12 22216373 22216376 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 4575782 4696962
Inversion Chr10 13799466 14115310

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 1035503 Chr7 14736832
Translocation Chr9 1035872 Chr7 3910397

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24360058	C-A	Hetero	INTERGENIC
SBS	Chr1	24360059	T-A	Hetero	INTERGENIC
SBS	Chr1	37104789	A-G	Hetero	INTERGENIC
SBS	Chr1	40021574	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	41224749	T-C	Hetero	INTRON
SBS	Chr1	42378822	C-A	Hetero	INTERGENIC
SBS	Chr2	8123293	A-G	Hetero	INTERGENIC
SBS	Chr2	15558862	G-A	Hetero	INTERGENIC
SBS	Chr3	271302	A-C	Hetero	INTERGENIC
SBS	Chr3	735863	T-A	Hetero	INTERGENIC
SBS	Chr3	11711734	C-T	Homo	INTERGENIC
SBS	Chr3	15303427	C-T	Homo	INTERGENIC
SBS	Chr3	26662650	C-T	Hetero	INTERGENIC
SBS	Chr3	34120713	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	6159963	A-G	Hetero	INTERGENIC
SBS	Chr4	22351407	G-A	Homo	INTERGENIC
SBS	Chr4	33647998	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g278800
SBS	Chr5	3926918	A-T	Homo	INTRON
SBS	Chr5	12305658	C-T	Homo	INTERGENIC
SBS	Chr5	19081983	G-A	Hetero	INTERGENIC
SBS	Chr5	25878465	T-C	Hetero	INTRON
SBS	Chr6	5604940	A-T	Hetero	INTRON
SBS	Chr6	15450883	G-T	Homo	INTERGENIC
SBS	Chr6	15450884	C-T	Homo	INTERGENIC
SBS	Chr7	6124873	T-C	Hetero	INTERGENIC
SBS	Chr7	29130719	G-A	Hetero	INTERGENIC
SBS	Chr8	2483815	T-A	Hetero	INTERGENIC
SBS	Chr8	5053930	G-C	Hetero	INTERGENIC
SBS	Chr8	7023480	C-A	Hetero	INTERGENIC
SBS	Chr8	11410804	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g101200
SBS	Chr8	11410805	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g101200
SBS	Chr8	11496802	G-A	Hetero	INTERGENIC
SBS	Chr8	20413750	C-T	Hetero	INTERGENIC
SBS	Chr8	28908020	G-A	Hetero	INTERGENIC
SBS	Chr9	4002812	G-T	Hetero	INTERGENIC
SBS	Chr9	6768805	T-G	Hetero	INTERGENIC
SBS	Chr9	22454614	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g204000
SBS	Chr10	11187433	C-G	Hetero	INTERGENIC
SBS	Chr10	14815129	A-G	Hetero	INTERGENIC
SBS	Chr10	17843229	A-T	Hetero	INTERGENIC
SBS	Chr11	10166846	C-T	Homo	INTERGENIC
SBS	Chr11	22646221	G-A	Hetero	INTRON
SBS	Chr11	23264544	G-T	Hetero	INTERGENIC
SBS	Chr11	24173898	G-A	Hetero	INTERGENIC
SBS	Chr12	11275966	A-G	Hetero	INTERGENIC
SBS	Chr12	13131925	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	7945752	7945753	1
Deletion	Chr4	10032268	10032272	4
Deletion	Chr3	11717919	11717921	2
Deletion	Chr1	12841390	12841391	1	OsKitaake01g153100
Deletion	Chr4	21913998	21914000	2
Deletion	Chr5	22787292	22787298	6
Deletion	Chr7	25591281	25591283	2
Deletion	Chr12	25986295	25986297	2
Deletion	Chr4	27777444	27777452	8
Deletion	Chr8	28457455	28457456	1	OsKitaake08g241100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	4575782	4696962
Inversion	Chr10	13799466	14115310

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes