Search Kitaake

Mutant Information

Mutant Name	FN3286-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3286-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 48

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2335466 G-A Hetero INTERGENIC
SBS Chr1 2335467 G-A Hetero INTERGENIC
SBS Chr1 14753786 C-T Hetero INTERGENIC
SBS Chr1 14753787 T-C Hetero INTERGENIC
SBS Chr1 15408439 C-A Hetero INTERGENIC
SBS Chr1 17883635 G-A Hetero INTERGENIC
SBS Chr1 23940593 G-A Hetero INTERGENIC
SBS Chr1 27431116 C-A Hetero INTERGENIC
SBS Chr1 27503598 C-T Hetero UTR_3_PRIME
SBS Chr1 30889368 G-A Hetero INTRON
SBS Chr1 40287788 C-T Hetero INTERGENIC
SBS Chr2 1618623 G-A Hetero INTRON
SBS Chr2 36711584 T-C Hetero INTERGENIC
SBS Chr3 12476563 G-A Hetero INTERGENIC
SBS Chr3 13785658 C-T Hetero INTERGENIC
SBS Chr3 17475338 C-T Hetero INTERGENIC
SBS Chr3 21606923 T-A Hetero INTRON
SBS Chr3 21606925 G-T Hetero INTRON
SBS Chr3 28320862 T-C Homo INTERGENIC
SBS Chr4 710283 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g005700
SBS Chr4 3668578 T-A Hetero INTERGENIC
SBS Chr4 3668583 C-A Hetero INTERGENIC
SBS Chr4 17952796 C-T Hetero INTERGENIC
SBS Chr4 23471812 T-A Hetero INTERGENIC
SBS Chr4 31794105 T-A Hetero INTERGENIC
SBS Chr5 6618287 G-A Hetero INTERGENIC
SBS Chr5 17438717 C-G Hetero INTERGENIC
SBS Chr5 17578405 T-C Hetero SPLICE_SITE_REGION
SBS Chr5 23132438 G-T Hetero INTRON
SBS Chr6 5150752 A-T Hetero INTERGENIC
SBS Chr6 18094725 C-A Homo INTERGENIC
SBS Chr6 28880507 G-T Hetero INTERGENIC
SBS Chr6 29835962 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g279200
SBS Chr7 1087202 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g014400
SBS Chr7 20153109 G-A Hetero UTR_5_PRIME
SBS Chr7 20349001 C-T Hetero INTRON
SBS Chr7 21203773 G-A Hetero INTERGENIC
SBS Chr7 21203774 C-T Hetero INTERGENIC
SBS Chr7 22082805 G-A Hetero INTERGENIC
SBS Chr7 25443623 T-A Hetero INTERGENIC
SBS Chr8 11115975 C-T Homo INTERGENIC
SBS Chr8 16185917 C-G Homo INTERGENIC
SBS Chr8 22482952 C-A Homo INTERGENIC
SBS Chr9 2871767 C-A Hetero INTERGENIC
SBS Chr12 1617600 C-G Hetero START_GAINED
SBS Chr12 6522525 T-A Hetero INTERGENIC
SBS Chr12 13286048 C-G Hetero INTERGENIC
SBS Chr12 25433903 A-C Homo INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 2754510 2754516 6
Deletion Chr12 3422602 3422604 2
Deletion Chr6 7054930 7054932 2
Deletion Chr2 16043944 16043960 16
Deletion Chr7 18357242 18357244 2
Deletion Chr11 19322286 19322304 18
Deletion Chr5 28286203 28286218 15
Deletion Chr1 31402031 31402033 2
Deletion Chr1 39514454 39514460 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18926899 18926902 2
Insertion Chr3 25812536 25812538 1
Insertion Chr5 6735236 6735239 2
Insertion Chr5 28145077 28145081 3
Insertion Chr6 12650871 12650874 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2335466	G-A	Hetero	INTERGENIC
SBS	Chr1	2335467	G-A	Hetero	INTERGENIC
SBS	Chr1	14753786	C-T	Hetero	INTERGENIC
SBS	Chr1	14753787	T-C	Hetero	INTERGENIC
SBS	Chr1	15408439	C-A	Hetero	INTERGENIC
SBS	Chr1	17883635	G-A	Hetero	INTERGENIC
SBS	Chr1	23940593	G-A	Hetero	INTERGENIC
SBS	Chr1	27431116	C-A	Hetero	INTERGENIC
SBS	Chr1	27503598	C-T	Hetero	UTR_3_PRIME
SBS	Chr1	30889368	G-A	Hetero	INTRON
SBS	Chr1	40287788	C-T	Hetero	INTERGENIC
SBS	Chr2	1618623	G-A	Hetero	INTRON
SBS	Chr2	36711584	T-C	Hetero	INTERGENIC
SBS	Chr3	12476563	G-A	Hetero	INTERGENIC
SBS	Chr3	13785658	C-T	Hetero	INTERGENIC
SBS	Chr3	17475338	C-T	Hetero	INTERGENIC
SBS	Chr3	21606923	T-A	Hetero	INTRON
SBS	Chr3	21606925	G-T	Hetero	INTRON
SBS	Chr3	28320862	T-C	Homo	INTERGENIC
SBS	Chr4	710283	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g005700
SBS	Chr4	3668578	T-A	Hetero	INTERGENIC
SBS	Chr4	3668583	C-A	Hetero	INTERGENIC
SBS	Chr4	17952796	C-T	Hetero	INTERGENIC
SBS	Chr4	23471812	T-A	Hetero	INTERGENIC
SBS	Chr4	31794105	T-A	Hetero	INTERGENIC
SBS	Chr5	6618287	G-A	Hetero	INTERGENIC
SBS	Chr5	17438717	C-G	Hetero	INTERGENIC
SBS	Chr5	17578405	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr5	23132438	G-T	Hetero	INTRON
SBS	Chr6	5150752	A-T	Hetero	INTERGENIC
SBS	Chr6	18094725	C-A	Homo	INTERGENIC
SBS	Chr6	28880507	G-T	Hetero	INTERGENIC
SBS	Chr6	29835962	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g279200
SBS	Chr7	1087202	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g014400
SBS	Chr7	20153109	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	20349001	C-T	Hetero	INTRON
SBS	Chr7	21203773	G-A	Hetero	INTERGENIC
SBS	Chr7	21203774	C-T	Hetero	INTERGENIC
SBS	Chr7	22082805	G-A	Hetero	INTERGENIC
SBS	Chr7	25443623	T-A	Hetero	INTERGENIC
SBS	Chr8	11115975	C-T	Homo	INTERGENIC
SBS	Chr8	16185917	C-G	Homo	INTERGENIC
SBS	Chr8	22482952	C-A	Homo	INTERGENIC
SBS	Chr9	2871767	C-A	Hetero	INTERGENIC
SBS	Chr12	1617600	C-G	Hetero	START_GAINED
SBS	Chr12	6522525	T-A	Hetero	INTERGENIC
SBS	Chr12	13286048	C-G	Hetero	INTERGENIC
SBS	Chr12	25433903	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	2754510	2754516	6
Deletion	Chr12	3422602	3422604	2
Deletion	Chr6	7054930	7054932	2
Deletion	Chr2	16043944	16043960	16
Deletion	Chr7	18357242	18357244	2
Deletion	Chr11	19322286	19322304	18
Deletion	Chr5	28286203	28286218	15
Deletion	Chr1	31402031	31402033	2
Deletion	Chr1	39514454	39514460	6

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes