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Mutant Information

Mutant Name	FN3287-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3287-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 67

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5659305 T-A Hetero INTRON
SBS Chr1 10229153 T-A Hetero INTERGENIC
SBS Chr1 11944854 C-T Hetero INTERGENIC
SBS Chr1 13423515 G-A Hetero INTRON
SBS Chr1 24988289 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g241500
SBS Chr1 25227389 G-A Homo INTERGENIC
SBS Chr2 2518029 T-C Hetero INTERGENIC
SBS Chr2 4895603 A-C Homo INTRON
SBS Chr2 14509348 T-C Hetero INTERGENIC
SBS Chr2 20491932 C-T Hetero INTERGENIC
SBS Chr2 22416748 G-A Homo SYNONYMOUS_CODING
SBS Chr2 22665235 C-T Hetero INTERGENIC
SBS Chr2 27727972 G-T Homo INTERGENIC
SBS Chr3 8606261 G-A Homo INTERGENIC
SBS Chr3 10195893 T-A Hetero INTERGENIC
SBS Chr3 22155286 T-C Hetero INTERGENIC
SBS Chr3 27544845 G-A Hetero INTERGENIC
SBS Chr4 2780853 G-T Hetero INTERGENIC
SBS Chr4 7565935 A-T Hetero INTERGENIC
SBS Chr4 11499660 G-C Homo INTERGENIC
SBS Chr4 18479054 C-G Hetero UTR_5_PRIME
SBS Chr4 29751523 A-C Hetero INTERGENIC
SBS Chr4 34564543 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g288300
SBS Chr5 477506 G-A Hetero INTERGENIC
SBS Chr5 10663819 G-A Homo INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 12581614 A-G Hetero INTERGENIC
SBS Chr5 16928131 C-T Hetero INTERGENIC
SBS Chr5 18993850 C-A Hetero INTERGENIC
SBS Chr5 26565464 T-C Hetero INTERGENIC
SBS Chr5 28686059 T-A Hetero INTRON
SBS Chr6 3558041 G-T Hetero INTERGENIC
SBS Chr6 5125405 A-C Hetero INTERGENIC
SBS Chr6 5684010 A-T Hetero INTERGENIC
SBS Chr6 8811998 T-G Homo INTERGENIC
SBS Chr6 13513566 G-A Hetero INTERGENIC
SBS Chr6 13540068 C-G Hetero INTERGENIC
SBS Chr6 19375343 C-T Hetero INTERGENIC
SBS Chr7 26607216 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g246900
SBS Chr7 27114285 G-C Hetero INTRON
SBS Chr7 29665620 G-T Hetero INTERGENIC
SBS Chr8 10418937 A-G Hetero INTERGENIC
SBS Chr8 11612522 G-A Hetero INTERGENIC
SBS Chr8 16350436 G-A Hetero INTERGENIC
SBS Chr8 17314333 G-A Hetero INTERGENIC
SBS Chr8 17709169 G-A Hetero INTERGENIC
SBS Chr8 20569067 C-T Hetero INTERGENIC
SBS Chr9 2162771 T-G Hetero INTERGENIC
SBS Chr9 2506769 C-T Hetero INTERGENIC
SBS Chr9 12420058 C-T Hetero INTERGENIC
SBS Chr9 16063818 C-A Hetero SYNONYMOUS_CODING
SBS Chr9 17711292 C-T Hetero INTERGENIC
SBS Chr10 2215030 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g017400
SBS Chr10 5540106 T-A Hetero INTERGENIC
SBS Chr10 10524268 A-T Hetero INTERGENIC
SBS Chr10 20998579 A-T Hetero INTRON
SBS Chr10 22580052 T-C Hetero INTERGENIC
SBS Chr11 775963 A-G Hetero INTERGENIC
SBS Chr11 8541298 A-T Hetero INTERGENIC
SBS Chr11 11997464 G-A Hetero INTERGENIC
SBS Chr11 18634999 A-T Hetero INTERGENIC
SBS Chr11 21080457 C-T Hetero INTERGENIC
SBS Chr12 8651596 G-T Hetero INTERGENIC
SBS Chr12 18098952 C-A Hetero INTERGENIC
SBS Chr12 18661333 G-A Hetero INTERGENIC
SBS Chr12 19899236 G-C Hetero INTERGENIC
SBS Chr12 20544354 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1932479 1932480 1
Deletion Chr5 2303722 2303728 6
Deletion Chr5 3092353 3092354 1
Deletion Chr6 4854492 4854494 2
Deletion Chr2 5173496 5173526 30
Deletion Chr12 8327979 8327981 2
Deletion Chr12 8651611 8651613 2
Deletion Chr7 10630719 10630728 9
Deletion Chr4 11129081 11129083 2
Deletion Chr3 11144304 11144310 6
Deletion Chr11 11169330 11169331 1
Deletion Chr7 11724860 11724868 8
Deletion Chr10 12180332 12180333 1
Deletion Chr5 12225984 12226002 18
Deletion Chr3 13484243 13484254 11
Deletion Chr8 17769475 17769476 1
Deletion Chr3 21180552 21180560 8
Deletion Chr10 21526717 21526718 1 OsKitaake10g171200
Deletion Chr10 23477830 23477832 2
Deletion Chr6 25844299 25844306 7
Deletion Chr8 26593626 26593627 1
Deletion Chr4 27047554 27047556 2
Deletion Chr3 32714417 32714420 3
Deletion Chr2 33856171 33856182 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29779032 29779036 3
Insertion Chr4 28729448 28729452 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 8582765 8701491
Inversion Chr9 8582776 8701499
Inversion Chr12 17705156 18248615
Inversion Chr12 17705165 18248620

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 17983245 Chr3 32782101
Translocation Chr9 17983253 Chr3 32781543
Translocation Chr12 23785919 Chr9 19460046 OsKitaake09g158700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5659305	T-A	Hetero	INTRON
SBS	Chr1	10229153	T-A	Hetero	INTERGENIC
SBS	Chr1	11944854	C-T	Hetero	INTERGENIC
SBS	Chr1	13423515	G-A	Hetero	INTRON
SBS	Chr1	24988289	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g241500
SBS	Chr1	25227389	G-A	Homo	INTERGENIC
SBS	Chr2	2518029	T-C	Hetero	INTERGENIC
SBS	Chr2	4895603	A-C	Homo	INTRON
SBS	Chr2	14509348	T-C	Hetero	INTERGENIC
SBS	Chr2	20491932	C-T	Hetero	INTERGENIC
SBS	Chr2	22416748	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	22665235	C-T	Hetero	INTERGENIC
SBS	Chr2	27727972	G-T	Homo	INTERGENIC
SBS	Chr3	8606261	G-A	Homo	INTERGENIC
SBS	Chr3	10195893	T-A	Hetero	INTERGENIC
SBS	Chr3	22155286	T-C	Hetero	INTERGENIC
SBS	Chr3	27544845	G-A	Hetero	INTERGENIC
SBS	Chr4	2780853	G-T	Hetero	INTERGENIC
SBS	Chr4	7565935	A-T	Hetero	INTERGENIC
SBS	Chr4	11499660	G-C	Homo	INTERGENIC
SBS	Chr4	18479054	C-G	Hetero	UTR_5_PRIME
SBS	Chr4	29751523	A-C	Hetero	INTERGENIC
SBS	Chr4	34564543	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g288300
SBS	Chr5	477506	G-A	Hetero	INTERGENIC
SBS	Chr5	10663819	G-A	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	12581614	A-G	Hetero	INTERGENIC
SBS	Chr5	16928131	C-T	Hetero	INTERGENIC
SBS	Chr5	18993850	C-A	Hetero	INTERGENIC
SBS	Chr5	26565464	T-C	Hetero	INTERGENIC
SBS	Chr5	28686059	T-A	Hetero	INTRON
SBS	Chr6	3558041	G-T	Hetero	INTERGENIC
SBS	Chr6	5125405	A-C	Hetero	INTERGENIC
SBS	Chr6	5684010	A-T	Hetero	INTERGENIC
SBS	Chr6	8811998	T-G	Homo	INTERGENIC
SBS	Chr6	13513566	G-A	Hetero	INTERGENIC
SBS	Chr6	13540068	C-G	Hetero	INTERGENIC
SBS	Chr6	19375343	C-T	Hetero	INTERGENIC
SBS	Chr7	26607216	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g246900
SBS	Chr7	27114285	G-C	Hetero	INTRON
SBS	Chr7	29665620	G-T	Hetero	INTERGENIC
SBS	Chr8	10418937	A-G	Hetero	INTERGENIC
SBS	Chr8	11612522	G-A	Hetero	INTERGENIC
SBS	Chr8	16350436	G-A	Hetero	INTERGENIC
SBS	Chr8	17314333	G-A	Hetero	INTERGENIC
SBS	Chr8	17709169	G-A	Hetero	INTERGENIC
SBS	Chr8	20569067	C-T	Hetero	INTERGENIC
SBS	Chr9	2162771	T-G	Hetero	INTERGENIC
SBS	Chr9	2506769	C-T	Hetero	INTERGENIC
SBS	Chr9	12420058	C-T	Hetero	INTERGENIC
SBS	Chr9	16063818	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	17711292	C-T	Hetero	INTERGENIC
SBS	Chr10	2215030	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g017400
SBS	Chr10	5540106	T-A	Hetero	INTERGENIC
SBS	Chr10	10524268	A-T	Hetero	INTERGENIC
SBS	Chr10	20998579	A-T	Hetero	INTRON
SBS	Chr10	22580052	T-C	Hetero	INTERGENIC
SBS	Chr11	775963	A-G	Hetero	INTERGENIC
SBS	Chr11	8541298	A-T	Hetero	INTERGENIC
SBS	Chr11	11997464	G-A	Hetero	INTERGENIC
SBS	Chr11	18634999	A-T	Hetero	INTERGENIC
SBS	Chr11	21080457	C-T	Hetero	INTERGENIC
SBS	Chr12	8651596	G-T	Hetero	INTERGENIC
SBS	Chr12	18098952	C-A	Hetero	INTERGENIC
SBS	Chr12	18661333	G-A	Hetero	INTERGENIC
SBS	Chr12	19899236	G-C	Hetero	INTERGENIC
SBS	Chr12	20544354	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1932479	1932480	1
Deletion	Chr5	2303722	2303728	6
Deletion	Chr5	3092353	3092354	1
Deletion	Chr6	4854492	4854494	2
Deletion	Chr2	5173496	5173526	30
Deletion	Chr12	8327979	8327981	2
Deletion	Chr12	8651611	8651613	2
Deletion	Chr7	10630719	10630728	9
Deletion	Chr4	11129081	11129083	2
Deletion	Chr3	11144304	11144310	6
Deletion	Chr11	11169330	11169331	1
Deletion	Chr7	11724860	11724868	8
Deletion	Chr10	12180332	12180333	1
Deletion	Chr5	12225984	12226002	18
Deletion	Chr3	13484243	13484254	11
Deletion	Chr8	17769475	17769476	1
Deletion	Chr3	21180552	21180560	8
Deletion	Chr10	21526717	21526718	1	OsKitaake10g171200
Deletion	Chr10	23477830	23477832	2
Deletion	Chr6	25844299	25844306	7
Deletion	Chr8	26593626	26593627	1
Deletion	Chr4	27047554	27047556	2
Deletion	Chr3	32714417	32714420	3
Deletion	Chr2	33856171	33856182	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8582765	8701491
Inversion	Chr9	8582776	8701499
Inversion	Chr12	17705156	18248615
Inversion	Chr12	17705165	18248620

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes