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Mutant Information

Mutant Name	FN3288-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3288-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22077338 T-C Hetero INTRON
SBS Chr1 27140369 G-T Homo INTERGENIC
SBS Chr2 26363621 C-T Hetero INTRON
SBS Chr2 26363624 A-T Hetero INTRON
SBS Chr2 26363627 T-C Hetero INTRON
SBS Chr3 18358102 G-T Hetero INTERGENIC
SBS Chr3 19039466 A-G Hetero INTERGENIC
SBS Chr4 9136291 C-T Homo INTERGENIC
SBS Chr4 15938437 G-A Homo INTERGENIC
SBS Chr4 32072065 G-A Homo INTERGENIC
SBS Chr5 568459 A-T Homo NON_SYNONYMOUS_CODING OsKitaake05g006000
SBS Chr5 4884886 A-T Homo INTERGENIC
SBS Chr5 12791186 A-G Hetero INTERGENIC
SBS Chr6 10400591 A-G Homo INTERGENIC
SBS Chr6 14534828 G-C Homo INTERGENIC
SBS Chr6 23975457 G-A Hetero INTERGENIC
SBS Chr6 26069720 C-T Hetero UTR_5_PRIME
SBS Chr7 26174814 A-G Hetero INTRON
SBS Chr7 29255551 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g280800
SBS Chr8 160395 T-A Hetero INTERGENIC
SBS Chr8 26036340 G-A Hetero INTERGENIC
SBS Chr8 28627825 C-T Homo INTERGENIC
SBS Chr9 189439 C-A Hetero INTERGENIC
SBS Chr9 2193405 T-C Hetero INTERGENIC
SBS Chr9 5613107 C-T Hetero INTERGENIC
SBS Chr9 9442887 G-A Hetero INTERGENIC
SBS Chr9 9442888 G-A Hetero INTERGENIC
SBS Chr9 14353509 T-A Homo INTERGENIC
SBS Chr10 165206 C-T Homo INTERGENIC
SBS Chr10 3841701 G-T Homo INTERGENIC
SBS Chr10 10165302 C-G Hetero INTERGENIC
SBS Chr11 1402636 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g018100
SBS Chr11 7274893 C-T Hetero INTERGENIC
SBS Chr11 9991083 G-A Hetero INTERGENIC
SBS Chr12 6787291 C-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4272959 4272964 5
Deletion Chr4 8096763 8096769 6
Deletion Chr9 12344753 12344757 4
Deletion Chr6 12348998 12349002 4
Deletion Chr11 12487231 12487240 9
Deletion Chr11 12488361 12488370 9
Deletion Chr2 13028669 13028692 23
Deletion Chr4 14854890 14854905 15
Deletion Chr2 15570096 15570097 1
Deletion Chr3 25981001 26084000 102999 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 19951499 19951503 3
Insertion Chr10 14804809 14804811 1
Insertion Chr11 20841491 20841496 4
Insertion Chr4 11570664 11570667 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 5348403 5501005 2
Inversion Chr1 5348414 5501374 2
Inversion Chr11 5690087 6159565 OsKitaake11g069800
Inversion Chr11 6137353 6159552 OsKitaake11g073900
Inversion Chr2 14283289 14493814 OsKitaake02g153200
Inversion Chr2 14283292 14493820 OsKitaake02g153200
Inversion Chr4 16279680 16488731 OsKitaake04g080300
Inversion Chr4 16279684 16488731 OsKitaake04g080300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22077338	T-C	Hetero	INTRON
SBS	Chr1	27140369	G-T	Homo	INTERGENIC
SBS	Chr2	26363621	C-T	Hetero	INTRON
SBS	Chr2	26363624	A-T	Hetero	INTRON
SBS	Chr2	26363627	T-C	Hetero	INTRON
SBS	Chr3	18358102	G-T	Hetero	INTERGENIC
SBS	Chr3	19039466	A-G	Hetero	INTERGENIC
SBS	Chr4	9136291	C-T	Homo	INTERGENIC
SBS	Chr4	15938437	G-A	Homo	INTERGENIC
SBS	Chr4	32072065	G-A	Homo	INTERGENIC
SBS	Chr5	568459	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g006000
SBS	Chr5	4884886	A-T	Homo	INTERGENIC
SBS	Chr5	12791186	A-G	Hetero	INTERGENIC
SBS	Chr6	10400591	A-G	Homo	INTERGENIC
SBS	Chr6	14534828	G-C	Homo	INTERGENIC
SBS	Chr6	23975457	G-A	Hetero	INTERGENIC
SBS	Chr6	26069720	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	26174814	A-G	Hetero	INTRON
SBS	Chr7	29255551	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g280800
SBS	Chr8	160395	T-A	Hetero	INTERGENIC
SBS	Chr8	26036340	G-A	Hetero	INTERGENIC
SBS	Chr8	28627825	C-T	Homo	INTERGENIC
SBS	Chr9	189439	C-A	Hetero	INTERGENIC
SBS	Chr9	2193405	T-C	Hetero	INTERGENIC
SBS	Chr9	5613107	C-T	Hetero	INTERGENIC
SBS	Chr9	9442887	G-A	Hetero	INTERGENIC
SBS	Chr9	9442888	G-A	Hetero	INTERGENIC
SBS	Chr9	14353509	T-A	Homo	INTERGENIC
SBS	Chr10	165206	C-T	Homo	INTERGENIC
SBS	Chr10	3841701	G-T	Homo	INTERGENIC
SBS	Chr10	10165302	C-G	Hetero	INTERGENIC
SBS	Chr11	1402636	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g018100
SBS	Chr11	7274893	C-T	Hetero	INTERGENIC
SBS	Chr11	9991083	G-A	Hetero	INTERGENIC
SBS	Chr12	6787291	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4272959	4272964	5
Deletion	Chr4	8096763	8096769	6
Deletion	Chr9	12344753	12344757	4
Deletion	Chr6	12348998	12349002	4
Deletion	Chr11	12487231	12487240	9
Deletion	Chr11	12488361	12488370	9
Deletion	Chr2	13028669	13028692	23
Deletion	Chr4	14854890	14854905	15
Deletion	Chr2	15570096	15570097	1
Deletion	Chr3	25981001	26084000	102999	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	5348403	5501005	2
Inversion	Chr1	5348414	5501374	2
Inversion	Chr11	5690087	6159565	OsKitaake11g069800
Inversion	Chr11	6137353	6159552	OsKitaake11g073900
Inversion	Chr2	14283289	14493814	OsKitaake02g153200
Inversion	Chr2	14283292	14493820	OsKitaake02g153200
Inversion	Chr4	16279680	16488731	OsKitaake04g080300
Inversion	Chr4	16279684	16488731	OsKitaake04g080300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes