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Mutant Information

Mutant Name	FN3292-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3292-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15879625 A-G Homo INTERGENIC
SBS Chr1 18599012 A-G Homo INTERGENIC
SBS Chr1 26314680 G-A Homo INTERGENIC
SBS Chr1 30147128 G-A Hetero INTERGENIC
SBS Chr2 22540945 A-T Hetero INTERGENIC
SBS Chr3 1077876 C-A Hetero INTERGENIC
SBS Chr3 8158891 T-A Hetero UTR_5_PRIME
SBS Chr3 18521317 G-A Homo UTR_5_PRIME
SBS Chr3 30336157 A-G Hetero INTERGENIC
SBS Chr4 5450102 G-A Hetero NON_SYNONYMOUS_CODING
SBS Chr5 9031228 G-A Hetero INTERGENIC
SBS Chr6 17737737 G-A Hetero INTERGENIC
SBS Chr6 19621641 G-T Hetero INTERGENIC
SBS Chr6 24071765 T-C Homo INTERGENIC
SBS Chr7 3975921 A-C Hetero INTERGENIC
SBS Chr7 10857890 A-T Hetero INTERGENIC
SBS Chr8 10164960 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g092600
SBS Chr8 14236491 G-A Hetero INTERGENIC
SBS Chr8 16424758 C-T Hetero INTERGENIC
SBS Chr9 9054359 A-G Hetero INTERGENIC
SBS Chr9 11323948 G-C Hetero INTERGENIC
SBS Chr9 13077210 T-A Homo INTERGENIC
SBS Chr9 13077212 C-A Homo INTERGENIC
SBS Chr9 22534506 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g206100
SBS Chr9 22534508 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g206100
SBS Chr10 4242561 A-T Homo INTERGENIC
SBS Chr11 3814626 G-A Hetero INTERGENIC
SBS Chr11 11213175 T-A Homo INTRON
SBS Chr11 21348156 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g168800
SBS Chr12 4815670 A-C Hetero INTERGENIC
SBS Chr12 16240869 T-C Hetero INTERGENIC
SBS Chr12 25154057 G-A Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3463139 3463145 6
Deletion Chr11 6196946 6196949 3
Deletion Chr12 10180556 10180585 29
Deletion Chr6 13479124 13479141 17
Deletion Chr4 14398002 14398005 3
Deletion Chr4 19609001 19651000 41999 4
Deletion Chr1 20321240 20321242 2
Deletion Chr7 21619186 21619197 11
Deletion Chr4 26758166 26758167 1
Deletion Chr6 26973042 26973049 7

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7368104 Chr1 39291628 OsKitaake01g422400
Translocation Chr12 7369508 Chr1 39291647 OsKitaake01g422400
Translocation Chr12 18993186 Chr5 22338439 OsKitaake05g182900
Translocation Chr12 18993206 Chr5 22337559 OsKitaake05g182900
Translocation Chr5 21247161 Chr4 19647500 OsKitaake05g171500
Translocation Chr5 21255855 Chr4 19608554

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15879625	A-G	Homo	INTERGENIC
SBS	Chr1	18599012	A-G	Homo	INTERGENIC
SBS	Chr1	26314680	G-A	Homo	INTERGENIC
SBS	Chr1	30147128	G-A	Hetero	INTERGENIC
SBS	Chr2	22540945	A-T	Hetero	INTERGENIC
SBS	Chr3	1077876	C-A	Hetero	INTERGENIC
SBS	Chr3	8158891	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	18521317	G-A	Homo	UTR_5_PRIME
SBS	Chr3	30336157	A-G	Hetero	INTERGENIC
SBS	Chr4	5450102	G-A	Hetero	NON_SYNONYMOUS_CODING
SBS	Chr5	9031228	G-A	Hetero	INTERGENIC
SBS	Chr6	17737737	G-A	Hetero	INTERGENIC
SBS	Chr6	19621641	G-T	Hetero	INTERGENIC
SBS	Chr6	24071765	T-C	Homo	INTERGENIC
SBS	Chr7	3975921	A-C	Hetero	INTERGENIC
SBS	Chr7	10857890	A-T	Hetero	INTERGENIC
SBS	Chr8	10164960	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g092600
SBS	Chr8	14236491	G-A	Hetero	INTERGENIC
SBS	Chr8	16424758	C-T	Hetero	INTERGENIC
SBS	Chr9	9054359	A-G	Hetero	INTERGENIC
SBS	Chr9	11323948	G-C	Hetero	INTERGENIC
SBS	Chr9	13077210	T-A	Homo	INTERGENIC
SBS	Chr9	13077212	C-A	Homo	INTERGENIC
SBS	Chr9	22534506	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g206100
SBS	Chr9	22534508	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g206100
SBS	Chr10	4242561	A-T	Homo	INTERGENIC
SBS	Chr11	3814626	G-A	Hetero	INTERGENIC
SBS	Chr11	11213175	T-A	Homo	INTRON
SBS	Chr11	21348156	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g168800
SBS	Chr12	4815670	A-C	Hetero	INTERGENIC
SBS	Chr12	16240869	T-C	Hetero	INTERGENIC
SBS	Chr12	25154057	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3463139	3463145	6
Deletion	Chr11	6196946	6196949	3
Deletion	Chr12	10180556	10180585	29
Deletion	Chr6	13479124	13479141	17
Deletion	Chr4	14398002	14398005	3
Deletion	Chr4	19609001	19651000	41999	4
Deletion	Chr1	20321240	20321242	2
Deletion	Chr7	21619186	21619197	11
Deletion	Chr4	26758166	26758167	1
Deletion	Chr6	26973042	26973049	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7368104	Chr1	39291628	OsKitaake01g422400
Translocation	Chr12	7369508	Chr1	39291647	OsKitaake01g422400
Translocation	Chr12	18993186	Chr5	22338439	OsKitaake05g182900
Translocation	Chr12	18993206	Chr5	22337559	OsKitaake05g182900
Translocation	Chr5	21247161	Chr4	19647500	OsKitaake05g171500
Translocation	Chr5	21255855	Chr4	19608554

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes