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Mutant Information

Mutant Name	FN3293-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3293-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7730573 T-C Hetero INTRON
SBS Chr1 15580266 G-A Hetero INTERGENIC
SBS Chr1 36168194 G-A Hetero INTERGENIC
SBS Chr1 42902399 G-A Homo INTERGENIC
SBS Chr2 3181513 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g045800
SBS Chr2 5532470 T-A Homo INTERGENIC
SBS Chr2 13887668 A-G Hetero INTERGENIC
SBS Chr2 23116992 G-A Hetero INTERGENIC
SBS Chr2 28293437 T-C Hetero INTERGENIC
SBS Chr2 37048354 T-C Homo NON_SYNONYMOUS_CODING OsKitaake02g397900
SBS Chr3 1329837 A-T Hetero INTERGENIC
SBS Chr3 2178316 A-G Hetero INTERGENIC
SBS Chr3 24693434 G-T Hetero INTRON
SBS Chr3 24693435 C-T Hetero INTRON
SBS Chr3 25860086 C-A Hetero INTERGENIC
SBS Chr3 25860087 A-C Hetero INTERGENIC
SBS Chr3 30496432 C-A Homo INTERGENIC
SBS Chr3 33529961 G-C Hetero INTRON
SBS Chr3 36185968 G-A Hetero INTERGENIC
SBS Chr4 13556 A-G Homo INTERGENIC
SBS Chr4 1506874 G-T Hetero INTERGENIC
SBS Chr4 6241018 A-C Hetero INTERGENIC
SBS Chr4 7887317 A-T Hetero INTERGENIC
SBS Chr4 10033999 A-G Hetero INTERGENIC
SBS Chr4 12352175 T-C Hetero INTERGENIC
SBS Chr4 22850818 C-T Homo INTRON
SBS Chr4 22981136 A-C Homo UTR_3_PRIME
SBS Chr5 3369414 T-C Hetero INTERGENIC
SBS Chr5 14584071 A-C Hetero INTERGENIC
SBS Chr5 15470178 C-A Hetero INTERGENIC
SBS Chr5 15470179 C-T Hetero INTERGENIC
SBS Chr5 18323128 T-A Homo INTERGENIC
SBS Chr6 5891845 A-T Hetero INTERGENIC
SBS Chr6 5891846 C-T Hetero INTERGENIC
SBS Chr6 5891847 C-T Hetero INTERGENIC
SBS Chr7 13055502 T-C Homo UTR_3_PRIME
SBS Chr7 14541074 T-A Hetero INTERGENIC
SBS Chr8 14234639 C-A Hetero INTERGENIC
SBS Chr8 18181162 A-T Hetero INTERGENIC
SBS Chr8 27950886 C-T Hetero INTERGENIC
SBS Chr9 827482 C-T Hetero INTERGENIC
SBS Chr9 3141545 T-G Hetero INTERGENIC
SBS Chr9 6209476 A-G Homo INTRON
SBS Chr9 14622546 C-T Hetero UTR_3_PRIME
SBS Chr9 15249362 A-T Hetero INTERGENIC
SBS Chr10 8878687 T-A Hetero INTERGENIC
SBS Chr10 23052500 C-A Homo INTRON
SBS Chr11 11713020 T-A Hetero INTRON
SBS Chr11 11713021 T-A Hetero INTRON
SBS Chr11 14547641 C-G Hetero INTRON
SBS Chr11 15797715 C-A Hetero INTERGENIC
SBS Chr11 16590816 C-A Hetero INTERGENIC
SBS Chr12 5960702 T-C Hetero INTERGENIC
SBS Chr12 10028562 G-A Homo INTRON
SBS Chr12 24333620 A-T Homo INTERGENIC
SBS Chr12 24333621 C-G Homo INTERGENIC
SBS Chr12 24333622 T-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 3052025 3052026 1
Deletion Chr10 5558518 5558525 7
Deletion Chr1 6597603 6597617 14
Deletion Chr3 12498001 12525000 26999 5
Deletion Chr11 13846893 13846894 1
Deletion Chr5 14718608 14718612 4
Deletion Chr12 17508061 17508069 8
Deletion Chr1 18596463 18596464 1 OsKitaake01g186600
Deletion Chr2 23493001 23521000 27999 2
Deletion Chr3 24507995 24507996 1
Deletion Chr3 26286001 26338000 51999
Deletion Chr8 27872979 27872997 18
Deletion Chr1 32704294 32704325 31
Deletion Chr2 32834409 32834410 1
Deletion Chr3 33948906 33948911 5
Deletion Chr3 35646593 35646597 4
Deletion Chr1 39260345 39260352 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 557267 557270 2
Insertion Chr2 31655490 31655507 16
Insertion Chr3 5118980 5118982 1
Insertion Chr3 25967012 25967022 9
Insertion Chr4 30445616 30445621 4
Insertion Chr12 6861052 6861055 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 6581542 Chr2 9330328 OsKitaake06g085600
Translocation Chr6 6582171 Chr2 4732990 2
Translocation Chr8 15357159 Chr2 4729108

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7730573	T-C	Hetero	INTRON
SBS	Chr1	15580266	G-A	Hetero	INTERGENIC
SBS	Chr1	36168194	G-A	Hetero	INTERGENIC
SBS	Chr1	42902399	G-A	Homo	INTERGENIC
SBS	Chr2	3181513	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g045800
SBS	Chr2	5532470	T-A	Homo	INTERGENIC
SBS	Chr2	13887668	A-G	Hetero	INTERGENIC
SBS	Chr2	23116992	G-A	Hetero	INTERGENIC
SBS	Chr2	28293437	T-C	Hetero	INTERGENIC
SBS	Chr2	37048354	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g397900
SBS	Chr3	1329837	A-T	Hetero	INTERGENIC
SBS	Chr3	2178316	A-G	Hetero	INTERGENIC
SBS	Chr3	24693434	G-T	Hetero	INTRON
SBS	Chr3	24693435	C-T	Hetero	INTRON
SBS	Chr3	25860086	C-A	Hetero	INTERGENIC
SBS	Chr3	25860087	A-C	Hetero	INTERGENIC
SBS	Chr3	30496432	C-A	Homo	INTERGENIC
SBS	Chr3	33529961	G-C	Hetero	INTRON
SBS	Chr3	36185968	G-A	Hetero	INTERGENIC
SBS	Chr4	13556	A-G	Homo	INTERGENIC
SBS	Chr4	1506874	G-T	Hetero	INTERGENIC
SBS	Chr4	6241018	A-C	Hetero	INTERGENIC
SBS	Chr4	7887317	A-T	Hetero	INTERGENIC
SBS	Chr4	10033999	A-G	Hetero	INTERGENIC
SBS	Chr4	12352175	T-C	Hetero	INTERGENIC
SBS	Chr4	22850818	C-T	Homo	INTRON
SBS	Chr4	22981136	A-C	Homo	UTR_3_PRIME
SBS	Chr5	3369414	T-C	Hetero	INTERGENIC
SBS	Chr5	14584071	A-C	Hetero	INTERGENIC
SBS	Chr5	15470178	C-A	Hetero	INTERGENIC
SBS	Chr5	15470179	C-T	Hetero	INTERGENIC
SBS	Chr5	18323128	T-A	Homo	INTERGENIC
SBS	Chr6	5891845	A-T	Hetero	INTERGENIC
SBS	Chr6	5891846	C-T	Hetero	INTERGENIC
SBS	Chr6	5891847	C-T	Hetero	INTERGENIC
SBS	Chr7	13055502	T-C	Homo	UTR_3_PRIME
SBS	Chr7	14541074	T-A	Hetero	INTERGENIC
SBS	Chr8	14234639	C-A	Hetero	INTERGENIC
SBS	Chr8	18181162	A-T	Hetero	INTERGENIC
SBS	Chr8	27950886	C-T	Hetero	INTERGENIC
SBS	Chr9	827482	C-T	Hetero	INTERGENIC
SBS	Chr9	3141545	T-G	Hetero	INTERGENIC
SBS	Chr9	6209476	A-G	Homo	INTRON
SBS	Chr9	14622546	C-T	Hetero	UTR_3_PRIME
SBS	Chr9	15249362	A-T	Hetero	INTERGENIC
SBS	Chr10	8878687	T-A	Hetero	INTERGENIC
SBS	Chr10	23052500	C-A	Homo	INTRON
SBS	Chr11	11713020	T-A	Hetero	INTRON
SBS	Chr11	11713021	T-A	Hetero	INTRON
SBS	Chr11	14547641	C-G	Hetero	INTRON
SBS	Chr11	15797715	C-A	Hetero	INTERGENIC
SBS	Chr11	16590816	C-A	Hetero	INTERGENIC
SBS	Chr12	5960702	T-C	Hetero	INTERGENIC
SBS	Chr12	10028562	G-A	Homo	INTRON
SBS	Chr12	24333620	A-T	Homo	INTERGENIC
SBS	Chr12	24333621	C-G	Homo	INTERGENIC
SBS	Chr12	24333622	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	3052025	3052026	1
Deletion	Chr10	5558518	5558525	7
Deletion	Chr1	6597603	6597617	14
Deletion	Chr3	12498001	12525000	26999	5
Deletion	Chr11	13846893	13846894	1
Deletion	Chr5	14718608	14718612	4
Deletion	Chr12	17508061	17508069	8
Deletion	Chr1	18596463	18596464	1	OsKitaake01g186600
Deletion	Chr2	23493001	23521000	27999	2
Deletion	Chr3	24507995	24507996	1
Deletion	Chr3	26286001	26338000	51999
Deletion	Chr8	27872979	27872997	18
Deletion	Chr1	32704294	32704325	31
Deletion	Chr2	32834409	32834410	1
Deletion	Chr3	33948906	33948911	5
Deletion	Chr3	35646593	35646597	4
Deletion	Chr1	39260345	39260352	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	6581542	Chr2	9330328	OsKitaake06g085600
Translocation	Chr6	6582171	Chr2	4732990	2
Translocation	Chr8	15357159	Chr2	4729108

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes