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Mutant Information

Mutant Name	FN3294-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3294-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10903919 G-A Hetero INTERGENIC
SBS Chr1 14710681 A-G Hetero INTRON
SBS Chr1 24259970 G-C Hetero INTERGENIC
SBS Chr1 25066302 G-T Hetero INTERGENIC
SBS Chr2 2143203 C-T Hetero INTRON
SBS Chr2 10961233 G-A Homo INTERGENIC
SBS Chr2 14200429 C-T Hetero INTERGENIC
SBS Chr2 15590471 G-A Hetero INTRON
SBS Chr2 16123486 A-G Hetero INTERGENIC
SBS Chr2 19760819 C-T Hetero INTERGENIC
SBS Chr2 19760820 C-T Hetero INTERGENIC
SBS Chr2 19760821 A-T Hetero INTERGENIC
SBS Chr2 20723063 T-C Hetero INTERGENIC
SBS Chr3 10845380 G-A Hetero INTERGENIC
SBS Chr3 25279109 G-A Hetero INTERGENIC
SBS Chr3 25848937 T-C Homo INTERGENIC
SBS Chr3 26799613 A-C Hetero INTERGENIC
SBS Chr3 32008864 T-A Hetero INTERGENIC
SBS Chr4 4049429 C-A Homo INTERGENIC
SBS Chr4 18847859 G-T Hetero INTERGENIC
SBS Chr4 20025758 C-T Homo INTERGENIC
SBS Chr4 29296094 T-C Hetero INTERGENIC
SBS Chr5 10089795 G-T Homo INTERGENIC
SBS Chr5 16782055 A-T Homo INTERGENIC
SBS Chr5 25581399 C-A Hetero INTERGENIC
SBS Chr5 26134762 T-C Hetero INTERGENIC
SBS Chr5 29728134 G-A Hetero INTERGENIC
SBS Chr6 7687870 T-A Hetero INTERGENIC
SBS Chr6 19406459 G-C Homo UTR_3_PRIME
SBS Chr6 25639323 C-T Homo INTERGENIC
SBS Chr7 716819 A-G Hetero INTERGENIC
SBS Chr7 5524073 T-C Hetero INTERGENIC
SBS Chr7 16868518 T-A Hetero INTERGENIC
SBS Chr7 16903876 A-G Hetero INTERGENIC
SBS Chr7 17166846 T-A Hetero INTERGENIC
SBS Chr7 21639230 T-A Hetero INTERGENIC
SBS Chr7 22104050 G-A Hetero INTERGENIC
SBS Chr7 23362585 G-A Hetero INTERGENIC
SBS Chr8 6623594 A-G Homo INTERGENIC
SBS Chr8 7127962 A-T Homo INTERGENIC
SBS Chr8 13964289 A-G Homo INTRON
SBS Chr8 24547193 T-A Hetero UTR_3_PRIME
SBS Chr8 25777976 G-T Hetero INTERGENIC
SBS Chr9 3789891 C-T Homo INTERGENIC
SBS Chr10 1144078 A-T Homo INTERGENIC
SBS Chr10 2662730 C-T Hetero UTR_5_PRIME
SBS Chr10 7576273 G-A Hetero INTERGENIC
SBS Chr10 21577983 C-T Hetero INTERGENIC
SBS Chr10 22621447 T-G Hetero INTERGENIC
SBS Chr11 6790397 G-A Hetero INTERGENIC
SBS Chr11 6982633 C-T Hetero INTERGENIC
SBS Chr11 12366516 C-T Hetero INTERGENIC
SBS Chr11 15485897 C-T Hetero INTERGENIC
SBS Chr11 15485900 C-G Hetero INTERGENIC
SBS Chr12 1491061 A-G Homo INTERGENIC
SBS Chr12 19368815 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1793009 1793016 7
Deletion Chr2 2345020 2345026 6
Deletion Chr8 2589992 2589996 4
Deletion Chr5 4120020 4120034 14
Deletion Chr3 5938893 5938894 1
Deletion Chr2 5939443 5939449 6
Deletion Chr1 7944652 7944655 3
Deletion Chr1 10269037 10269040 3
Deletion Chr8 13900668 13900671 3
Deletion Chr7 15218835 15218843 8
Deletion Chr12 24508748 24508753 5
Deletion Chr12 25653110 25653134 24
Deletion Chr5 27007786 27007794 8
Deletion Chr6 30143007 30143022 15
Deletion Chr1 31524815 31524838 23

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8017515 8017518 2
Insertion Chr5 29723011 29723013 1
Insertion Chr9 12579202 12579213 10
Insertion Chr10 7499396 7499400 3
Insertion Chr11 29598358 29598362 3
Insertion Chr12 27048903 27048906 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 21636468 21667454

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 7199198 Chr9 13291717 OsKitaake10g047300
Translocation Chr9 12685188 Chr1 3990462
Translocation Chr9 12689518 Chr1 3990450
Translocation Chr9 14334930 Chr2 13680758 2
Translocation Chr9 14335375 Chr2 13680746 2
Translocation Chr12 20093188 Chr5 3052245 OsKitaake05g036100
Translocation Chr12 20107877 Chr5 3052230 OsKitaake05g036100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10903919	G-A	Hetero	INTERGENIC
SBS	Chr1	14710681	A-G	Hetero	INTRON
SBS	Chr1	24259970	G-C	Hetero	INTERGENIC
SBS	Chr1	25066302	G-T	Hetero	INTERGENIC
SBS	Chr2	2143203	C-T	Hetero	INTRON
SBS	Chr2	10961233	G-A	Homo	INTERGENIC
SBS	Chr2	14200429	C-T	Hetero	INTERGENIC
SBS	Chr2	15590471	G-A	Hetero	INTRON
SBS	Chr2	16123486	A-G	Hetero	INTERGENIC
SBS	Chr2	19760819	C-T	Hetero	INTERGENIC
SBS	Chr2	19760820	C-T	Hetero	INTERGENIC
SBS	Chr2	19760821	A-T	Hetero	INTERGENIC
SBS	Chr2	20723063	T-C	Hetero	INTERGENIC
SBS	Chr3	10845380	G-A	Hetero	INTERGENIC
SBS	Chr3	25279109	G-A	Hetero	INTERGENIC
SBS	Chr3	25848937	T-C	Homo	INTERGENIC
SBS	Chr3	26799613	A-C	Hetero	INTERGENIC
SBS	Chr3	32008864	T-A	Hetero	INTERGENIC
SBS	Chr4	4049429	C-A	Homo	INTERGENIC
SBS	Chr4	18847859	G-T	Hetero	INTERGENIC
SBS	Chr4	20025758	C-T	Homo	INTERGENIC
SBS	Chr4	29296094	T-C	Hetero	INTERGENIC
SBS	Chr5	10089795	G-T	Homo	INTERGENIC
SBS	Chr5	16782055	A-T	Homo	INTERGENIC
SBS	Chr5	25581399	C-A	Hetero	INTERGENIC
SBS	Chr5	26134762	T-C	Hetero	INTERGENIC
SBS	Chr5	29728134	G-A	Hetero	INTERGENIC
SBS	Chr6	7687870	T-A	Hetero	INTERGENIC
SBS	Chr6	19406459	G-C	Homo	UTR_3_PRIME
SBS	Chr6	25639323	C-T	Homo	INTERGENIC
SBS	Chr7	716819	A-G	Hetero	INTERGENIC
SBS	Chr7	5524073	T-C	Hetero	INTERGENIC
SBS	Chr7	16868518	T-A	Hetero	INTERGENIC
SBS	Chr7	16903876	A-G	Hetero	INTERGENIC
SBS	Chr7	17166846	T-A	Hetero	INTERGENIC
SBS	Chr7	21639230	T-A	Hetero	INTERGENIC
SBS	Chr7	22104050	G-A	Hetero	INTERGENIC
SBS	Chr7	23362585	G-A	Hetero	INTERGENIC
SBS	Chr8	6623594	A-G	Homo	INTERGENIC
SBS	Chr8	7127962	A-T	Homo	INTERGENIC
SBS	Chr8	13964289	A-G	Homo	INTRON
SBS	Chr8	24547193	T-A	Hetero	UTR_3_PRIME
SBS	Chr8	25777976	G-T	Hetero	INTERGENIC
SBS	Chr9	3789891	C-T	Homo	INTERGENIC
SBS	Chr10	1144078	A-T	Homo	INTERGENIC
SBS	Chr10	2662730	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	7576273	G-A	Hetero	INTERGENIC
SBS	Chr10	21577983	C-T	Hetero	INTERGENIC
SBS	Chr10	22621447	T-G	Hetero	INTERGENIC
SBS	Chr11	6790397	G-A	Hetero	INTERGENIC
SBS	Chr11	6982633	C-T	Hetero	INTERGENIC
SBS	Chr11	12366516	C-T	Hetero	INTERGENIC
SBS	Chr11	15485897	C-T	Hetero	INTERGENIC
SBS	Chr11	15485900	C-G	Hetero	INTERGENIC
SBS	Chr12	1491061	A-G	Homo	INTERGENIC
SBS	Chr12	19368815	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1793009	1793016	7
Deletion	Chr2	2345020	2345026	6
Deletion	Chr8	2589992	2589996	4
Deletion	Chr5	4120020	4120034	14
Deletion	Chr3	5938893	5938894	1
Deletion	Chr2	5939443	5939449	6
Deletion	Chr1	7944652	7944655	3
Deletion	Chr1	10269037	10269040	3
Deletion	Chr8	13900668	13900671	3
Deletion	Chr7	15218835	15218843	8
Deletion	Chr12	24508748	24508753	5
Deletion	Chr12	25653110	25653134	24
Deletion	Chr5	27007786	27007794	8
Deletion	Chr6	30143007	30143022	15
Deletion	Chr1	31524815	31524838	23

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21636468	21667454

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes