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| Mutant Information |
|---|
| Mutant Name | FN3295-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3295-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1622423 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 3577534 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13963548 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 3620934 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 9489529 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6701697 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19526443 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 25999012 | C-A | Hetero | STOP_GAINED | OsKitaake05g229500 |
| SBS | Chr7 | 14336250 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3881944 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2660136 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 1366751 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 23568065 | A-C | Homo | INTRON | |
| SBS | Chr10 | 23568067 | T-A | Homo | INTRON | |
| SBS | Chr11 | 6655670 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 14994038 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16691670 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 1357964 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g019900 |
| SBS | Chr12 | 19284165 | G-A | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 771001 | 1235000 | 463999 | 82 |
| Deletion | Chr2 | 1054237 | 1054244 | 7 | |
| Deletion | Chr11 | 3295112 | 3295115 | 3 | OsKitaake11g045800 |
| Deletion | Chr10 | 3995829 | 3995843 | 14 | |
| Deletion | Chr5 | 5241682 | 5241683 | 1 | |
| Deletion | Chr10 | 8115261 | 8115264 | 3 | |
| Deletion | Chr4 | 8357281 | 8357301 | 20 | |
| Deletion | Chr6 | 14781604 | 14781608 | 4 | |
| Deletion | Chr9 | 20296896 | 20296897 | 1 | |
| Deletion | Chr2 | 23090234 | 23090235 | 1 | OsKitaake02g226100 |
| Deletion | Chr11 | 25472091 | 25472097 | 6 | |
| Deletion | Chr8 | 26115165 | 26115167 | 2 | |
| Deletion | Chr12 | 26458154 | 26458167 | 13 | |
| Deletion | Chr5 | 27767776 | 27767783 | 7 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 5437886 | 5437889 | 2 | |
| Insertion | Chr7 | 20999508 | 20999511 | 2 | |
| Insertion | Chr12 | 9566876 | 9566879 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 16468091 | 16765602 | |
| Inversion | Chr11 | 16676799 | 16765599 |