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| Mutant Information |
|---|
| Mutant Name | FN3296-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3296-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22150790 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 2260470 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19911317 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 25080633 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18753409 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3707188 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16642163 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 19426870 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 26671785 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 34051259 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr5 | 8797443 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9200655 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12011972 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 13223121 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 13432733 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g103900 |
| SBS | Chr5 | 27375959 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4146337 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20818709 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 16566102 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 26718303 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 868711 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7943805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 25897291 | G-T | Hetero | INTRON | |
| SBS | Chr8 | 25897292 | G-T | Hetero | INTRON | |
| SBS | Chr9 | 16426673 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 18261057 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 11358915 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12552384 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15802598 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 17532526 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22960976 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 24104763 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 26536448 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 3191560 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 20489936 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 27055543 | G-A | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 3078804 | 3078806 | 2 | |
| Deletion | Chr10 | 3618492 | 3618493 | 1 | |
| Deletion | Chr8 | 6615934 | 6615938 | 4 | |
| Deletion | Chr2 | 10961396 | 10961398 | 2 | |
| Deletion | Chr3 | 12414831 | 12414832 | 1 | |
| Deletion | Chr2 | 12569578 | 12569579 | 1 | |
| Deletion | Chr1 | 13462001 | 13471000 | 8999 | OsKitaake01g156600 |
| Deletion | Chr8 | 13669291 | 13669292 | 1 | |
| Deletion | Chr7 | 16175858 | 16175862 | 4 | |
| Deletion | Chr10 | 22810657 | 22810750 | 93 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 17628060 | 17628063 | 2 | |
| Insertion | Chr3 | 9711996 | 9712000 | 3 | |
| Insertion | Chr5 | 30189657 | 30189660 | 2 | |
| Insertion | Chr8 | 7323137 | 7323139 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 35359511 | 35775024 | 2 |
| Inversion | Chr1 | 35359519 | 35775033 | 2 |