Search Kitaake

Mutant Information

Mutant Name	FN3297-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3297-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1705242 A-T Hetero INTERGENIC
SBS Chr1 21668816 T-G Hetero INTERGENIC
SBS Chr3 15847812 T-G Hetero UTR_3_PRIME
SBS Chr3 28770341 C-T Hetero INTERGENIC
SBS Chr3 30617575 T-G Hetero INTERGENIC
SBS Chr4 8279064 T-A Homo INTERGENIC
SBS Chr4 13417702 A-C Homo INTERGENIC
SBS Chr4 28724513 G-A Homo INTERGENIC
SBS Chr5 4258021 A-T Hetero INTERGENIC
SBS Chr5 13287531 T-C Homo INTERGENIC
SBS Chr5 19942315 G-A Homo INTERGENIC
SBS Chr5 28274786 C-T Homo INTERGENIC
SBS Chr6 19876441 C-T Homo INTERGENIC
SBS Chr6 28970132 A-G Homo INTERGENIC
SBS Chr7 469648 G-T Hetero INTERGENIC
SBS Chr7 527011 G-A Homo INTERGENIC
SBS Chr7 11620168 T-C Homo INTERGENIC
SBS Chr7 15222846 A-G Homo INTERGENIC
SBS Chr8 4553821 C-T Hetero INTERGENIC
SBS Chr8 5481726 T-G Hetero INTERGENIC
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr9 6700981 C-A Hetero INTERGENIC
SBS Chr11 3121493 G-A Hetero INTERGENIC
SBS Chr11 10520373 T-C Hetero INTERGENIC
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr12 3742745 G-T Hetero INTRON

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 3529261 3529272 11
Deletion Chr1 5381183 5381190 7
Deletion Chr8 8504116 8504118 2
Deletion Chr5 8620632 8620637 5
Deletion Chr11 10477048 10477051 3
Deletion Chr7 11648903 11648907 4
Deletion Chr11 12147595 12147597 2
Deletion Chr11 12493686 12493695 9
Deletion Chr2 12835078 12835099 21
Deletion Chr9 16543382 16543392 10
Deletion Chr1 17987001 17992000 4999 OsKitaake01g182400
Deletion Chr1 18767919 18767926 7
Deletion Chr2 24887702 24887703 1
Deletion Chr5 28451200 28451201 1
Deletion Chr6 30689152 30689163 11
Deletion Chr1 31550232 31550243 11

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 19375234 19375242 7
Insertion Chr9 19065639 19065642 2
Insertion Chr11 9928774 9928777 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1102497 Chr2 23785982
Translocation Chr7 12316605 Chr5 26168668
Translocation Chr7 12326695 Chr5 26168666
Translocation Chr2 36253164 Chr1 17986682 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1705242	A-T	Hetero	INTERGENIC
SBS	Chr1	21668816	T-G	Hetero	INTERGENIC
SBS	Chr3	15847812	T-G	Hetero	UTR_3_PRIME
SBS	Chr3	28770341	C-T	Hetero	INTERGENIC
SBS	Chr3	30617575	T-G	Hetero	INTERGENIC
SBS	Chr4	8279064	T-A	Homo	INTERGENIC
SBS	Chr4	13417702	A-C	Homo	INTERGENIC
SBS	Chr4	28724513	G-A	Homo	INTERGENIC
SBS	Chr5	4258021	A-T	Hetero	INTERGENIC
SBS	Chr5	13287531	T-C	Homo	INTERGENIC
SBS	Chr5	19942315	G-A	Homo	INTERGENIC
SBS	Chr5	28274786	C-T	Homo	INTERGENIC
SBS	Chr6	19876441	C-T	Homo	INTERGENIC
SBS	Chr6	28970132	A-G	Homo	INTERGENIC
SBS	Chr7	469648	G-T	Hetero	INTERGENIC
SBS	Chr7	527011	G-A	Homo	INTERGENIC
SBS	Chr7	11620168	T-C	Homo	INTERGENIC
SBS	Chr7	15222846	A-G	Homo	INTERGENIC
SBS	Chr8	4553821	C-T	Hetero	INTERGENIC
SBS	Chr8	5481726	T-G	Hetero	INTERGENIC
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr9	6700981	C-A	Hetero	INTERGENIC
SBS	Chr11	3121493	G-A	Hetero	INTERGENIC
SBS	Chr11	10520373	T-C	Hetero	INTERGENIC
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr12	3742745	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	3529261	3529272	11
Deletion	Chr1	5381183	5381190	7
Deletion	Chr8	8504116	8504118	2
Deletion	Chr5	8620632	8620637	5
Deletion	Chr11	10477048	10477051	3
Deletion	Chr7	11648903	11648907	4
Deletion	Chr11	12147595	12147597	2
Deletion	Chr11	12493686	12493695	9
Deletion	Chr2	12835078	12835099	21
Deletion	Chr9	16543382	16543392	10
Deletion	Chr1	17987001	17992000	4999	OsKitaake01g182400
Deletion	Chr1	18767919	18767926	7
Deletion	Chr2	24887702	24887703	1
Deletion	Chr5	28451200	28451201	1
Deletion	Chr6	30689152	30689163	11
Deletion	Chr1	31550232	31550243	11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1102497	Chr2	23785982
Translocation	Chr7	12316605	Chr5	26168668
Translocation	Chr7	12326695	Chr5	26168666
Translocation	Chr2	36253164	Chr1	17986682	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes