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Mutant Information

Mutant Name	FN3298-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3298-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 28

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24845107 C-T Hetero INTERGENIC
SBS Chr2 27143198 G-A Hetero INTERGENIC
SBS Chr2 33933728 T-G Hetero INTRON
SBS Chr3 1457568 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g020700
SBS Chr3 3221596 C-A Hetero INTERGENIC
SBS Chr3 13324938 C-T Homo INTERGENIC
SBS Chr3 26991165 G-A Hetero INTERGENIC
SBS Chr4 8522626 C-T Homo INTERGENIC
SBS Chr4 18195226 G-A Hetero INTERGENIC
SBS Chr4 25615978 G-A Hetero INTERGENIC
SBS Chr4 30837796 G-A Hetero INTRON
SBS Chr5 6849696 T-A Homo INTERGENIC
SBS Chr6 16180397 G-A Hetero INTERGENIC
SBS Chr6 25579221 A-G Hetero INTRON
SBS Chr7 28331169 C-G Hetero INTERGENIC
SBS Chr8 7609911 G-A Homo INTERGENIC
SBS Chr8 24741107 G-A Hetero INTERGENIC
SBS Chr9 20282294 G-T Hetero INTERGENIC
SBS Chr9 20463672 G-A Hetero INTERGENIC
SBS Chr10 10079758 T-A Homo INTERGENIC
SBS Chr10 11524674 G-A Hetero UTR_3_PRIME
SBS Chr10 14630278 A-T Homo INTERGENIC
SBS Chr10 14630279 T-A Homo INTERGENIC
SBS Chr11 9640721 A-T Hetero INTERGENIC
SBS Chr11 17445913 A-G Hetero INTERGENIC
SBS Chr11 18513033 G-A Hetero INTERGENIC
SBS Chr12 5058887 G-A Hetero INTERGENIC
SBS Chr12 26654309 G-A Homo UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1481871 1481875 4
Deletion Chr5 2461001 2487000 25999 5
Deletion Chr3 6671001 6690000 18999 2
Deletion Chr4 7033594 7033595 1
Deletion Chr5 9228001 9346000 117999 7
Deletion Chr7 10463470 10463475 5
Deletion Chr2 16951038 16951040 2
Deletion Chr7 17562001 17577000 14999
Deletion Chr2 19000001 19353000 352999 35
Deletion Chr10 19811665 19811667 2
Deletion Chr2 29767900 29767909 9
Deletion Chr4 34934694 34934699 5

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 11991294 11991296 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 12261459 12294984
Inversion Chr7 16387522 16389607
Inversion Chr7 17575250 17576222

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8614026 Chr7 13904532
Translocation Chr9 11053740 Chr3 20482069
Translocation Chr10 11595041 Chr7 16389586 OsKitaake10g069100
Translocation Chr12 11831454 Chr4 2796085
Translocation Chr10 23840336 Chr1 3787752 OsKitaake01g050900
Translocation Chr10 23840986 Chr1 3787744 OsKitaake01g050900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24845107	C-T	Hetero	INTERGENIC
SBS	Chr2	27143198	G-A	Hetero	INTERGENIC
SBS	Chr2	33933728	T-G	Hetero	INTRON
SBS	Chr3	1457568	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g020700
SBS	Chr3	3221596	C-A	Hetero	INTERGENIC
SBS	Chr3	13324938	C-T	Homo	INTERGENIC
SBS	Chr3	26991165	G-A	Hetero	INTERGENIC
SBS	Chr4	8522626	C-T	Homo	INTERGENIC
SBS	Chr4	18195226	G-A	Hetero	INTERGENIC
SBS	Chr4	25615978	G-A	Hetero	INTERGENIC
SBS	Chr4	30837796	G-A	Hetero	INTRON
SBS	Chr5	6849696	T-A	Homo	INTERGENIC
SBS	Chr6	16180397	G-A	Hetero	INTERGENIC
SBS	Chr6	25579221	A-G	Hetero	INTRON
SBS	Chr7	28331169	C-G	Hetero	INTERGENIC
SBS	Chr8	7609911	G-A	Homo	INTERGENIC
SBS	Chr8	24741107	G-A	Hetero	INTERGENIC
SBS	Chr9	20282294	G-T	Hetero	INTERGENIC
SBS	Chr9	20463672	G-A	Hetero	INTERGENIC
SBS	Chr10	10079758	T-A	Homo	INTERGENIC
SBS	Chr10	11524674	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	14630278	A-T	Homo	INTERGENIC
SBS	Chr10	14630279	T-A	Homo	INTERGENIC
SBS	Chr11	9640721	A-T	Hetero	INTERGENIC
SBS	Chr11	17445913	A-G	Hetero	INTERGENIC
SBS	Chr11	18513033	G-A	Hetero	INTERGENIC
SBS	Chr12	5058887	G-A	Hetero	INTERGENIC
SBS	Chr12	26654309	G-A	Homo	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1481871	1481875	4
Deletion	Chr5	2461001	2487000	25999	5
Deletion	Chr3	6671001	6690000	18999	2
Deletion	Chr4	7033594	7033595	1
Deletion	Chr5	9228001	9346000	117999	7
Deletion	Chr7	10463470	10463475	5
Deletion	Chr2	16951038	16951040	2
Deletion	Chr7	17562001	17577000	14999
Deletion	Chr2	19000001	19353000	352999	35
Deletion	Chr10	19811665	19811667	2
Deletion	Chr2	29767900	29767909	9
Deletion	Chr4	34934694	34934699	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12261459	12294984
Inversion	Chr7	16387522	16389607
Inversion	Chr7	17575250	17576222

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes