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| Mutant Information |
|---|
| Mutant Name | FN3302-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3302-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10431816 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 3484133 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 22074564 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31279937 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 21014246 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 22746405 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1650447 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16506925 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 19791456 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 28000106 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 5231429 | G-T | Hetero | INTRON | |
| SBS | Chr5 | 17283875 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 5066278 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g068000 |
| SBS | Chr6 | 14403823 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 28669956 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 28820795 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3764863 | G-A | Hetero | INTRON | |
| SBS | Chr9 | 3419878 | A-G | Homo | INTERGENIC | |
| SBS | Chr9 | 4783810 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7341702 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 12377632 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20143459 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 9515396 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 15649293 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr11 | 15884896 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g127500 |
| SBS | Chr12 | 13251238 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 1352005 | 1352006 | 1 | |
| Deletion | Chr9 | 3030811 | 3030814 | 3 | |
| Deletion | Chr11 | 3246006 | 3246007 | 1 | |
| Deletion | Chr3 | 5875108 | 5875112 | 4 | |
| Deletion | Chr9 | 9936791 | 9936792 | 1 | |
| Deletion | Chr9 | 18967599 | 18967601 | 2 | |
| Deletion | Chr10 | 23148219 | 23148227 | 8 | |
| Deletion | Chr4 | 33445749 | 33445757 | 8 | OsKitaake04g275000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 9084393 | 9084398 | 4 | |
| Insertion | Chr7 | 8488588 | 8488590 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 1632489 | 1820056 | 2 |
| Inversion | Chr2 | 30918426 | 30925767 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 1633771 | Chr4 | 6070973 | OsKitaake08g021100 |
| Translocation | Chr8 | 1820817 | Chr6 | 26977418 | OsKitaake08g228400 |