Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3305-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3305-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2930639 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 9524673 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g121900 |
| SBS | Chr1 | 28598265 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 6560872 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10060829 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 19636260 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 21221177 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 31669150 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 33554301 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g346900 |
| SBS | Chr3 | 10837483 | G-A | Homo | INTRON | |
| SBS | Chr3 | 22216875 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29195062 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5165342 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g025200 |
| SBS | Chr4 | 11319475 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11883034 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 29658376 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 13488322 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 16923520 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 27617631 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 7969605 | G-T | Homo | INTRON | |
| SBS | Chr7 | 10312153 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 11057512 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12187935 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17129595 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17478276 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 27201665 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 16506301 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 16506303 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15482453 | G-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 10381089 | 10381090 | 1 | |
| Deletion | Chr3 | 10871334 | 10871337 | 3 | |
| Deletion | Chr12 | 11652227 | 11652538 | 311 | |
| Deletion | Chr7 | 22777001 | 22876000 | 98999 | 8 |
| Deletion | Chr3 | 25430072 | 25430073 | 1 | |
| Deletion | Chr12 | 27023519 | 27023840 | 321 | |
| Deletion | Chr1 | 32852001 | 32890000 | 37999 | 6 |
| Deletion | Chr1 | 32894001 | 33129000 | 234999 | 46 |
| Deletion | Chr1 | 37047951 | 37047952 | 1 | OsKitaake01g394900 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 1623972 | 1623984 | 11 | |
| Insertion | Chr2 | 35666599 | 35666604 | 4 | |
| Insertion | Chr3 | 3947402 | 3947410 | 7 | |
| Insertion | Chr7 | 11037064 | 11037067 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 17546173 | 18155325 | OsKitaake03g215900 |
| Inversion | Chr3 | 17562903 | 18155313 |