Search Kitaake

Mutant Information

Mutant Name	FN3306-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3306-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16520756 C-T Hetero INTERGENIC
SBS Chr1 17421613 C-T Hetero INTERGENIC
SBS Chr1 26538474 C-A Hetero INTERGENIC
SBS Chr1 33030488 C-A Homo INTERGENIC
SBS Chr2 9950847 C-A Homo INTERGENIC
SBS Chr2 10805796 A-T Hetero INTERGENIC
SBS Chr2 13929187 T-A Hetero INTERGENIC
SBS Chr2 32326691 C-G Hetero INTERGENIC
SBS Chr3 5571179 A-G Hetero SYNONYMOUS_CODING
SBS Chr3 10454099 A-T Hetero INTRON
SBS Chr3 24488182 T-G Homo INTERGENIC
SBS Chr4 8861842 G-A Homo INTERGENIC
SBS Chr5 5747582 T-G Hetero INTRON
SBS Chr5 6410948 C-T Hetero INTERGENIC
SBS Chr5 10810547 C-T Hetero INTERGENIC
SBS Chr5 10810549 A-T Hetero INTERGENIC
SBS Chr5 10810551 A-T Hetero INTERGENIC
SBS Chr5 17784565 T-C Hetero INTERGENIC
SBS Chr5 23344235 G-A Homo INTERGENIC
SBS Chr6 21184933 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g188000
SBS Chr8 1328905 A-G Hetero INTERGENIC
SBS Chr8 10856396 C-T Hetero INTERGENIC
SBS Chr8 12345844 G-A Hetero INTERGENIC
SBS Chr8 15821100 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g122100
SBS Chr8 16735889 A-T Homo INTERGENIC
SBS Chr8 17802505 T-A Hetero INTERGENIC
SBS Chr8 19329725 A-G Hetero INTERGENIC
SBS Chr8 20177530 C-A Hetero INTERGENIC
SBS Chr9 18299683 A-G Hetero INTERGENIC
SBS Chr10 6231531 G-A Hetero INTERGENIC
SBS Chr10 8638342 T-C Hetero INTERGENIC
SBS Chr10 15457882 G-A Hetero INTERGENIC
SBS Chr11 13682018 G-A Hetero INTERGENIC
SBS Chr11 21716155 G-T Hetero INTERGENIC
SBS Chr12 12180398 G-A Homo INTERGENIC
SBS Chr12 14241217 T-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2578211 2578212 1 OsKitaake01g032700
Deletion Chr5 2941436 2941443 7
Deletion Chr4 8126859 8126867 8
Deletion Chr2 8328443 8328444 1 OsKitaake02g106000
Deletion Chr4 8771918 8771921 3
Deletion Chr10 10170029 10170030 1
Deletion Chr4 12555095 12555096 1
Deletion Chr9 12657509 12657510 1
Deletion Chr11 16651743 16651745 2
Deletion Chr11 18861001 18874000 12999 OsKitaake11g147200
Deletion Chr4 23823582 23823588 6
Deletion Chr11 29057787 29057795 8
Deletion Chr11 29719787 29719788 1
Deletion Chr1 32027135 32027137 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 21958852 21958857 4 OsKitaake09g195350
Insertion Chr3 22175582 22175605 22 OsKitaake03g241635
Insertion Chr8 11785930 11785932 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 994108 1011349
Inversion Chr4 8058184 8142575
Inversion Chr4 8058276 8142583
Inversion Chr6 25004340 25136279

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 9851522 Chr4 26287189
Translocation Chr9 9851523 Chr4 26287634

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16520756	C-T	Hetero	INTERGENIC
SBS	Chr1	17421613	C-T	Hetero	INTERGENIC
SBS	Chr1	26538474	C-A	Hetero	INTERGENIC
SBS	Chr1	33030488	C-A	Homo	INTERGENIC
SBS	Chr2	9950847	C-A	Homo	INTERGENIC
SBS	Chr2	10805796	A-T	Hetero	INTERGENIC
SBS	Chr2	13929187	T-A	Hetero	INTERGENIC
SBS	Chr2	32326691	C-G	Hetero	INTERGENIC
SBS	Chr3	5571179	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10454099	A-T	Hetero	INTRON
SBS	Chr3	24488182	T-G	Homo	INTERGENIC
SBS	Chr4	8861842	G-A	Homo	INTERGENIC
SBS	Chr5	5747582	T-G	Hetero	INTRON
SBS	Chr5	6410948	C-T	Hetero	INTERGENIC
SBS	Chr5	10810547	C-T	Hetero	INTERGENIC
SBS	Chr5	10810549	A-T	Hetero	INTERGENIC
SBS	Chr5	10810551	A-T	Hetero	INTERGENIC
SBS	Chr5	17784565	T-C	Hetero	INTERGENIC
SBS	Chr5	23344235	G-A	Homo	INTERGENIC
SBS	Chr6	21184933	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g188000
SBS	Chr8	1328905	A-G	Hetero	INTERGENIC
SBS	Chr8	10856396	C-T	Hetero	INTERGENIC
SBS	Chr8	12345844	G-A	Hetero	INTERGENIC
SBS	Chr8	15821100	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g122100
SBS	Chr8	16735889	A-T	Homo	INTERGENIC
SBS	Chr8	17802505	T-A	Hetero	INTERGENIC
SBS	Chr8	19329725	A-G	Hetero	INTERGENIC
SBS	Chr8	20177530	C-A	Hetero	INTERGENIC
SBS	Chr9	18299683	A-G	Hetero	INTERGENIC
SBS	Chr10	6231531	G-A	Hetero	INTERGENIC
SBS	Chr10	8638342	T-C	Hetero	INTERGENIC
SBS	Chr10	15457882	G-A	Hetero	INTERGENIC
SBS	Chr11	13682018	G-A	Hetero	INTERGENIC
SBS	Chr11	21716155	G-T	Hetero	INTERGENIC
SBS	Chr12	12180398	G-A	Homo	INTERGENIC
SBS	Chr12	14241217	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2578211	2578212	1	OsKitaake01g032700
Deletion	Chr5	2941436	2941443	7
Deletion	Chr4	8126859	8126867	8
Deletion	Chr2	8328443	8328444	1	OsKitaake02g106000
Deletion	Chr4	8771918	8771921	3
Deletion	Chr10	10170029	10170030	1
Deletion	Chr4	12555095	12555096	1
Deletion	Chr9	12657509	12657510	1
Deletion	Chr11	16651743	16651745	2
Deletion	Chr11	18861001	18874000	12999	OsKitaake11g147200
Deletion	Chr4	23823582	23823588	6
Deletion	Chr11	29057787	29057795	8
Deletion	Chr11	29719787	29719788	1
Deletion	Chr1	32027135	32027137	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	994108	1011349
Inversion	Chr4	8058184	8142575
Inversion	Chr4	8058276	8142583
Inversion	Chr6	25004340	25136279

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes