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Mutant Information

Mutant Name	FN3308-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3308-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 34509854 T-C Hetero INTERGENIC
SBS Chr1 42224097 G-A Hetero INTERGENIC
SBS Chr2 6293347 C-T Hetero INTRON
SBS Chr2 15311413 C-T Hetero INTERGENIC
SBS Chr2 25824251 C-G Hetero INTERGENIC
SBS Chr2 32053647 T-C Homo INTERGENIC
SBS Chr3 13262991 C-T Hetero INTERGENIC
SBS Chr3 26652883 A-G Hetero INTERGENIC
SBS Chr3 35674147 G-T Hetero INTERGENIC
SBS Chr4 14565645 G-A Homo INTERGENIC
SBS Chr5 5476843 C-T Hetero INTERGENIC
SBS Chr5 6510486 C-A Hetero INTERGENIC
SBS Chr5 16055700 G-C Homo INTERGENIC
SBS Chr5 17902688 C-T Homo INTRON
SBS Chr6 5566733 G-A Homo INTERGENIC
SBS Chr6 28270497 A-T Hetero INTERGENIC
SBS Chr7 450539 A-G Hetero UTR_3_PRIME
SBS Chr7 450540 G-T Hetero UTR_3_PRIME
SBS Chr7 562102 C-T Hetero INTERGENIC
SBS Chr7 13590887 G-A Homo INTERGENIC
SBS Chr8 13300407 T-A Hetero INTERGENIC
SBS Chr8 18770872 G-A Hetero INTERGENIC
SBS Chr8 23415685 T-A Hetero INTERGENIC
SBS Chr10 1907633 T-C Homo NON_SYNONYMOUS_CODING OsKitaake10g015000
SBS Chr10 3450164 A-G Homo INTERGENIC
SBS Chr10 10920311 G-A Homo INTERGENIC
SBS Chr10 15510290 G-A Homo INTERGENIC
SBS Chr11 7289202 C-T Hetero INTERGENIC
SBS Chr12 378575 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g004400
SBS Chr12 8292606 C-T Hetero INTERGENIC
SBS Chr12 15726745 A-T Hetero INTERGENIC
SBS Chr12 27148650 A-T Homo INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 806001 828000 21999 3
Deletion Chr1 9644479 9644484 5
Deletion Chr7 10639063 10639064 1
Deletion Chr10 14555538 14555539 1
Deletion Chr4 15708034 15708049 15
Deletion Chr12 23197763 23197777 14
Deletion Chr1 26658001 26720000 61999 2
Deletion Chr4 29064784 29064787 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 3634520 3634523 2
Insertion Chr6 5475212 5475215 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3760921 3968943 2
Inversion Chr1 3760934 3968948 2
Inversion Chr9 15784331 15976262 2
Inversion Chr9 15784341 15976270 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34509854	T-C	Hetero	INTERGENIC
SBS	Chr1	42224097	G-A	Hetero	INTERGENIC
SBS	Chr2	6293347	C-T	Hetero	INTRON
SBS	Chr2	15311413	C-T	Hetero	INTERGENIC
SBS	Chr2	25824251	C-G	Hetero	INTERGENIC
SBS	Chr2	32053647	T-C	Homo	INTERGENIC
SBS	Chr3	13262991	C-T	Hetero	INTERGENIC
SBS	Chr3	26652883	A-G	Hetero	INTERGENIC
SBS	Chr3	35674147	G-T	Hetero	INTERGENIC
SBS	Chr4	14565645	G-A	Homo	INTERGENIC
SBS	Chr5	5476843	C-T	Hetero	INTERGENIC
SBS	Chr5	6510486	C-A	Hetero	INTERGENIC
SBS	Chr5	16055700	G-C	Homo	INTERGENIC
SBS	Chr5	17902688	C-T	Homo	INTRON
SBS	Chr6	5566733	G-A	Homo	INTERGENIC
SBS	Chr6	28270497	A-T	Hetero	INTERGENIC
SBS	Chr7	450539	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	450540	G-T	Hetero	UTR_3_PRIME
SBS	Chr7	562102	C-T	Hetero	INTERGENIC
SBS	Chr7	13590887	G-A	Homo	INTERGENIC
SBS	Chr8	13300407	T-A	Hetero	INTERGENIC
SBS	Chr8	18770872	G-A	Hetero	INTERGENIC
SBS	Chr8	23415685	T-A	Hetero	INTERGENIC
SBS	Chr10	1907633	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g015000
SBS	Chr10	3450164	A-G	Homo	INTERGENIC
SBS	Chr10	10920311	G-A	Homo	INTERGENIC
SBS	Chr10	15510290	G-A	Homo	INTERGENIC
SBS	Chr11	7289202	C-T	Hetero	INTERGENIC
SBS	Chr12	378575	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g004400
SBS	Chr12	8292606	C-T	Hetero	INTERGENIC
SBS	Chr12	15726745	A-T	Hetero	INTERGENIC
SBS	Chr12	27148650	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	806001	828000	21999	3
Deletion	Chr1	9644479	9644484	5
Deletion	Chr7	10639063	10639064	1
Deletion	Chr10	14555538	14555539	1
Deletion	Chr4	15708034	15708049	15
Deletion	Chr12	23197763	23197777	14
Deletion	Chr1	26658001	26720000	61999	2
Deletion	Chr4	29064784	29064787	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3760921	3968943	2
Inversion	Chr1	3760934	3968948	2
Inversion	Chr9	15784331	15976262	2
Inversion	Chr9	15784341	15976270	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes