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| Mutant Information |
|---|
| Mutant Name | FN3309-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3309-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1628730 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 10049790 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g127100 |
| SBS | Chr1 | 14832854 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 16844598 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25898783 | A-G | Homo | INTERGENIC | |
| SBS | Chr1 | 29357826 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9921355 | C-G | Homo | INTERGENIC | |
| SBS | Chr3 | 24503940 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26341443 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28054626 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7794797 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 8822706 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21489438 | T-G | Hetero | INTRON | |
| SBS | Chr4 | 30620543 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 3290113 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7041149 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 6781864 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13690956 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16765842 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 27374444 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15907110 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g122800 |
| SBS | Chr8 | 18369837 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 25338666 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3184488 | C-A | Hetero | INTRON | |
| SBS | Chr9 | 7595752 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 20590908 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 6273651 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 7327212 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 10895521 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g064300 |
| SBS | Chr10 | 11678035 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1090486 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 6667222 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19463786 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 2039309 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9678322 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12544776 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 15098036 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18124376 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 21827422 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 24268042 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 11804307 | 11804317 | 10 | |
| Deletion | Chr5 | 16218462 | 16218463 | 1 | |
| Deletion | Chr9 | 17401425 | 17401426 | 1 | |
| Deletion | Chr2 | 19386367 | 19386369 | 2 | |
| Deletion | Chr11 | 21194858 | 21194891 | 33 | |
| Deletion | Chr7 | 22071335 | 22071356 | 21 | |
| Deletion | Chr7 | 22635638 | 22635665 | 27 | |
| Deletion | Chr5 | 23650430 | 23650431 | 1 | |
| Deletion | Chr5 | 24611276 | 24611287 | 11 | |
| Deletion | Chr6 | 26756489 | 26756511 | 22 | |
| Deletion | Chr1 | 40535691 | 40535725 | 34 | OsKitaake01g440400 |
| Deletion | Chr1 | 41503913 | 41503914 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 933743 | 933749 | 5 | |
| Insertion | Chr9 | 20556571 | 20556574 | 2 | |
| Insertion | Chr10 | 10606822 | 10606825 | 2 | |
| Insertion | Chr10 | 22338162 | 22338165 | 2 |