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Mutant Information

Mutant Name	FN3310-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3310-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5999558 G-C Homo NON_SYNONYMOUS_CODING OsKitaake01g076600
SBS Chr1 23822386 G-A Hetero INTERGENIC
SBS Chr1 35619767 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g377000
SBS Chr2 3893717 A-C Hetero INTERGENIC
SBS Chr2 12587473 T-C Hetero INTERGENIC
SBS Chr2 19426893 G-A Hetero INTRON
SBS Chr2 19426894 T-A Hetero INTRON
SBS Chr2 34152200 G-A Hetero INTERGENIC
SBS Chr2 35865388 A-T Hetero INTERGENIC
SBS Chr3 2775121 C-T Hetero INTRON
SBS Chr3 7174831 G-C Hetero INTERGENIC
SBS Chr3 12294662 A-T Hetero INTERGENIC
SBS Chr3 13227851 G-A Hetero INTRON
SBS Chr4 861273 G-A Hetero INTERGENIC
SBS Chr4 1595036 T-C Hetero INTERGENIC
SBS Chr4 5020762 C-G Hetero INTERGENIC
SBS Chr4 16066833 C-G Hetero START_GAINED
SBS Chr4 20198854 T-C Homo INTRON
SBS Chr4 24508794 A-T Hetero INTERGENIC
SBS Chr4 25969163 C-A Hetero UTR_3_PRIME
SBS Chr4 36489113 A-G Homo INTERGENIC
SBS Chr5 12361705 T-C Hetero INTERGENIC
SBS Chr5 13008767 T-G Hetero INTERGENIC
SBS Chr5 18337086 G-C Hetero INTERGENIC
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 10261834 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g117000
SBS Chr6 19290116 G-A Hetero INTRON
SBS Chr6 24668096 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g218700
SBS Chr7 2982309 C-T Hetero INTERGENIC
SBS Chr7 5189847 T-C Hetero INTERGENIC
SBS Chr7 8508049 G-A Hetero INTERGENIC
SBS Chr7 14176390 G-A Hetero INTERGENIC
SBS Chr7 15759703 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 16147412 C-T Hetero INTERGENIC
SBS Chr7 16437757 G-A Hetero INTERGENIC
SBS Chr7 20793623 G-T Homo INTERGENIC
SBS Chr7 24992658 C-T Hetero INTRON
SBS Chr7 27810231 T-A Hetero UTR_5_PRIME
SBS Chr8 4175634 A-T Hetero INTERGENIC
SBS Chr8 12074075 C-G Homo INTERGENIC
SBS Chr8 18812508 G-A Hetero INTERGENIC
SBS Chr9 9468574 G-A Hetero INTERGENIC
SBS Chr9 11172923 C-T Hetero INTRON
SBS Chr9 11696755 A-G Hetero INTERGENIC
SBS Chr10 5515403 T-G Hetero INTERGENIC
SBS Chr10 7533768 C-G Hetero INTERGENIC
SBS Chr10 10107659 G-T Hetero INTERGENIC
SBS Chr10 20191445 C-T Homo INTERGENIC
SBS Chr11 6526873 C-A Hetero INTERGENIC
SBS Chr11 14053713 C-T Hetero INTRON
SBS Chr11 22343942 G-A Hetero INTERGENIC
SBS Chr11 22820302 A-G Hetero INTERGENIC
SBS Chr11 29039181 A-G Hetero INTERGENIC
SBS Chr12 18979934 T-G Homo NON_SYNONYMOUS_CODING OsKitaake12g140000
SBS Chr12 23620618 A-T Hetero INTRON
SBS Chr12 26691508 C-T Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 375455 375457 2
Deletion Chr12 2350778 2350785 7
Deletion Chr6 3858811 3858821 10
Deletion Chr10 4599028 4599030 2
Deletion Chr7 5192001 5212000 19999 2
Deletion Chr7 5236001 5268000 31999 2
Deletion Chr1 5572145 5572147 2
Deletion Chr3 6402864 6402884 20 OsKitaake03g091100
Deletion Chr12 14397834 14397837 3
Deletion Chr7 14518343 14518344 1
Deletion Chr9 17225980 17225986 6
Deletion Chr3 18897752 18897754 2
Deletion Chr10 19018105 19018107 2
Deletion Chr4 19030717 19030719 2
Deletion Chr8 19769308 19769310 2
Deletion Chr8 21543606 21543610 4
Deletion Chr1 22894263 22894264 1
Deletion Chr7 23069054 23069057 3 OsKitaake07g199000
Deletion Chr7 24202937 24202962 25
Deletion Chr5 27509217 27509220 3
Deletion Chr1 28155523 28155525 2
Deletion Chr1 41492892 41492899 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 919580 919584 3
Insertion Chr10 20926226 20926229 2
Insertion Chr11 28003644 28003647 2 OsKitaake11g230100
Insertion Chr12 10016519 10016523 3
Insertion Chr12 17570513 17570516 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 5190512 5236293
Inversion Chr7 5208173 5262259

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5999558	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g076600
SBS	Chr1	23822386	G-A	Hetero	INTERGENIC
SBS	Chr1	35619767	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g377000
SBS	Chr2	3893717	A-C	Hetero	INTERGENIC
SBS	Chr2	12587473	T-C	Hetero	INTERGENIC
SBS	Chr2	19426893	G-A	Hetero	INTRON
SBS	Chr2	19426894	T-A	Hetero	INTRON
SBS	Chr2	34152200	G-A	Hetero	INTERGENIC
SBS	Chr2	35865388	A-T	Hetero	INTERGENIC
SBS	Chr3	2775121	C-T	Hetero	INTRON
SBS	Chr3	7174831	G-C	Hetero	INTERGENIC
SBS	Chr3	12294662	A-T	Hetero	INTERGENIC
SBS	Chr3	13227851	G-A	Hetero	INTRON
SBS	Chr4	861273	G-A	Hetero	INTERGENIC
SBS	Chr4	1595036	T-C	Hetero	INTERGENIC
SBS	Chr4	5020762	C-G	Hetero	INTERGENIC
SBS	Chr4	16066833	C-G	Hetero	START_GAINED
SBS	Chr4	20198854	T-C	Homo	INTRON
SBS	Chr4	24508794	A-T	Hetero	INTERGENIC
SBS	Chr4	25969163	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	36489113	A-G	Homo	INTERGENIC
SBS	Chr5	12361705	T-C	Hetero	INTERGENIC
SBS	Chr5	13008767	T-G	Hetero	INTERGENIC
SBS	Chr5	18337086	G-C	Hetero	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	10261834	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g117000
SBS	Chr6	19290116	G-A	Hetero	INTRON
SBS	Chr6	24668096	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g218700
SBS	Chr7	2982309	C-T	Hetero	INTERGENIC
SBS	Chr7	5189847	T-C	Hetero	INTERGENIC
SBS	Chr7	8508049	G-A	Hetero	INTERGENIC
SBS	Chr7	14176390	G-A	Hetero	INTERGENIC
SBS	Chr7	15759703	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	16147412	C-T	Hetero	INTERGENIC
SBS	Chr7	16437757	G-A	Hetero	INTERGENIC
SBS	Chr7	20793623	G-T	Homo	INTERGENIC
SBS	Chr7	24992658	C-T	Hetero	INTRON
SBS	Chr7	27810231	T-A	Hetero	UTR_5_PRIME
SBS	Chr8	4175634	A-T	Hetero	INTERGENIC
SBS	Chr8	12074075	C-G	Homo	INTERGENIC
SBS	Chr8	18812508	G-A	Hetero	INTERGENIC
SBS	Chr9	9468574	G-A	Hetero	INTERGENIC
SBS	Chr9	11172923	C-T	Hetero	INTRON
SBS	Chr9	11696755	A-G	Hetero	INTERGENIC
SBS	Chr10	5515403	T-G	Hetero	INTERGENIC
SBS	Chr10	7533768	C-G	Hetero	INTERGENIC
SBS	Chr10	10107659	G-T	Hetero	INTERGENIC
SBS	Chr10	20191445	C-T	Homo	INTERGENIC
SBS	Chr11	6526873	C-A	Hetero	INTERGENIC
SBS	Chr11	14053713	C-T	Hetero	INTRON
SBS	Chr11	22343942	G-A	Hetero	INTERGENIC
SBS	Chr11	22820302	A-G	Hetero	INTERGENIC
SBS	Chr11	29039181	A-G	Hetero	INTERGENIC
SBS	Chr12	18979934	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g140000
SBS	Chr12	23620618	A-T	Hetero	INTRON
SBS	Chr12	26691508	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	375455	375457	2
Deletion	Chr12	2350778	2350785	7
Deletion	Chr6	3858811	3858821	10
Deletion	Chr10	4599028	4599030	2
Deletion	Chr7	5192001	5212000	19999	2
Deletion	Chr7	5236001	5268000	31999	2
Deletion	Chr1	5572145	5572147	2
Deletion	Chr3	6402864	6402884	20	OsKitaake03g091100
Deletion	Chr12	14397834	14397837	3
Deletion	Chr7	14518343	14518344	1
Deletion	Chr9	17225980	17225986	6
Deletion	Chr3	18897752	18897754	2
Deletion	Chr10	19018105	19018107	2
Deletion	Chr4	19030717	19030719	2
Deletion	Chr8	19769308	19769310	2
Deletion	Chr8	21543606	21543610	4
Deletion	Chr1	22894263	22894264	1
Deletion	Chr7	23069054	23069057	3	OsKitaake07g199000
Deletion	Chr7	24202937	24202962	25
Deletion	Chr5	27509217	27509220	3
Deletion	Chr1	28155523	28155525	2
Deletion	Chr1	41492892	41492899	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5190512	5236293
Inversion	Chr7	5208173	5262259

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes