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Mutant Information

Mutant Name	FN3311-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3311-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1709897 C-A Hetero INTERGENIC
SBS Chr1 18561928 G-A Homo INTERGENIC
SBS Chr1 38895077 G-A Hetero INTRON
SBS Chr1 44165630 A-G Homo INTERGENIC
SBS Chr2 1514901 T-C Hetero INTERGENIC
SBS Chr2 9683619 G-A Homo SYNONYMOUS_CODING
SBS Chr2 36963936 C-T Homo INTRON
SBS Chr3 22747057 C-T Hetero INTERGENIC
SBS Chr3 24110448 G-A Homo INTERGENIC
SBS Chr3 25020471 C-T Homo INTERGENIC
SBS Chr4 3502139 T-G Hetero INTERGENIC
SBS Chr4 5174598 C-T Homo INTERGENIC
SBS Chr4 5876847 C-T Homo INTERGENIC
SBS Chr4 22623729 G-A Hetero INTERGENIC
SBS Chr6 19484861 C-T Homo INTERGENIC
SBS Chr6 23526255 C-A Hetero INTERGENIC
SBS Chr6 29605310 C-T Hetero INTERGENIC
SBS Chr7 21049410 G-C Hetero UTR_5_PRIME
SBS Chr8 4859070 G-A Hetero INTERGENIC
SBS Chr8 4859071 T-A Hetero INTERGENIC
SBS Chr8 11189387 T-A Homo INTERGENIC
SBS Chr9 4001072 C-T Hetero INTERGENIC
SBS Chr9 16253390 C-T Homo INTERGENIC
SBS Chr11 1003148 A-C Hetero INTERGENIC
SBS Chr11 5228442 C-T Homo NON_SYNONYMOUS_CODING OsKitaake11g065800
SBS Chr11 20384435 C-T Hetero INTERGENIC
SBS Chr11 26879550 A-G Hetero INTERGENIC
SBS Chr11 26879551 G-A Hetero INTERGENIC
SBS Chr12 15581491 G-A Homo INTERGENIC
SBS Chr12 19778375 C-T Hetero INTERGENIC
SBS Chr1 426114 T-C Hetero UTR_3_PRIME
SBS Chr1 15935534 G-A Hetero INTERGENIC
SBS Chr2 313616 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g004400
SBS Chr2 8357782 A-G Hetero INTERGENIC
SBS Chr2 9079254 T-C Hetero INTERGENIC
SBS Chr2 9406228 C-G Hetero INTERGENIC
SBS Chr2 15206281 G-T Homo INTERGENIC
SBS Chr2 25671880 G-A Hetero INTERGENIC
SBS Chr2 33719550 A-G Hetero INTERGENIC
SBS Chr3 957439 T-A Hetero INTRON
SBS Chr3 25020471 C-T Homo INTERGENIC
SBS Chr4 5174598 C-T Homo INTERGENIC
SBS Chr4 5876847 C-T Homo INTERGENIC
SBS Chr4 25398950 C-T Homo INTERGENIC
SBS Chr5 5111188 G-A Hetero INTERGENIC
SBS Chr5 17344221 A-G Hetero INTERGENIC
SBS Chr7 1467525 C-A Hetero INTERGENIC
SBS Chr7 13673188 G-A Hetero INTERGENIC
SBS Chr7 19719851 G-A Hetero INTERGENIC
SBS Chr8 6777648 A-G Hetero INTERGENIC
SBS Chr8 21709886 G-A Hetero INTRON
SBS Chr8 28713180 G-A Hetero INTERGENIC
SBS Chr9 1372164 G-A Hetero INTERGENIC
SBS Chr10 9801146 A-T Hetero INTERGENIC
SBS Chr10 9801147 C-T Hetero INTERGENIC
SBS Chr10 12113443 G-A Homo INTERGENIC
SBS Chr10 18312658 G-A Hetero INTRON
SBS Chr10 20544771 C-T Hetero INTERGENIC
SBS Chr11 1003148 A-C Homo INTERGENIC
SBS Chr11 11034640 T-G Homo INTERGENIC
SBS Chr11 23813122 T-A Homo INTRON
SBS Chr12 4669150 G-A Hetero INTERGENIC
SBS Chr12 7624888 C-T Hetero INTERGENIC
SBS Chr12 7690132 C-T Hetero INTERGENIC
SBS Chr12 16834608 G-A Hetero INTERGENIC
SBS Chr12 21291680 C-A Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 130528 130531 3
Deletion Chr9 457855 457856 1 OsKitaake09g003700
Deletion Chr3 667785 667787 2
Deletion Chr3 2412681 2412682 1
Deletion Chr7 5295296 5295297 1
Deletion Chr7 8432212 8432214 2
Deletion Chr12 8900280 8900282 2
Deletion Chr7 9375266 9375271 5
Deletion Chr9 12106349 12106358 9
Deletion Chr10 12239751 12239755 4
Deletion Chr5 12277168 12277176 8
Deletion Chr10 12810001 12814000 3999
Deletion Chr7 14524402 14524403 1
Deletion Chr2 15390858 15390861 3
Deletion Chr6 15557001 15579000 21999
Deletion Chr12 15651388 15651394 6
Deletion Chr8 16107780 16107785 5
Deletion Chr3 16670223 16670230 7
Deletion Chr10 18328731 18328749 18
Deletion Chr5 18944182 18944187 5
Deletion Chr7 19757774 19757776 2
Deletion Chr4 19980370 19980372 2
Deletion Chr2 20696091 20696092 1
Deletion Chr1 20902220 20902240 20
Deletion Chr6 21488060 21488065 5
Deletion Chr1 21894523 21894525 2 OsKitaake01g210900
Deletion Chr6 22004672 22004674 2
Deletion Chr6 29018001 29053000 34999
Deletion Chr1 30496757 30496762 5
Deletion Chr1 42867003 42867010 7

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18060263 18060267 3
Insertion Chr2 12171421 12171423 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 9721318 9747750 OsKitaake09g059200
Inversion Chr1 22779310 22783042
Inversion Chr1 22779322 22783047
Inversion Chr6 29164764 29736755 2
Inversion Chr6 29164771 29736760 2

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr2 3304374 Chr1 36503487 OsKitaake02g048000
Translocation Chr2 3304377 Chr1 36502611 OsKitaake02g048000
Translocation Chr8 4071512 Chr7 22762852 2
Translocation Chr8 4071513 Chr7 22762566 2
Translocation Chr10 8620467 Chr2 7369150 OsKitaake02g098300
Translocation Chr10 8643000 Chr2 7369147 OsKitaake02g098300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1709897	C-A	Hetero	INTERGENIC
SBS	Chr1	18561928	G-A	Homo	INTERGENIC
SBS	Chr1	38895077	G-A	Hetero	INTRON
SBS	Chr1	44165630	A-G	Homo	INTERGENIC
SBS	Chr2	1514901	T-C	Hetero	INTERGENIC
SBS	Chr2	9683619	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	36963936	C-T	Homo	INTRON
SBS	Chr3	22747057	C-T	Hetero	INTERGENIC
SBS	Chr3	24110448	G-A	Homo	INTERGENIC
SBS	Chr3	25020471	C-T	Homo	INTERGENIC
SBS	Chr4	3502139	T-G	Hetero	INTERGENIC
SBS	Chr4	5174598	C-T	Homo	INTERGENIC
SBS	Chr4	5876847	C-T	Homo	INTERGENIC
SBS	Chr4	22623729	G-A	Hetero	INTERGENIC
SBS	Chr6	19484861	C-T	Homo	INTERGENIC
SBS	Chr6	23526255	C-A	Hetero	INTERGENIC
SBS	Chr6	29605310	C-T	Hetero	INTERGENIC
SBS	Chr7	21049410	G-C	Hetero	UTR_5_PRIME
SBS	Chr8	4859070	G-A	Hetero	INTERGENIC
SBS	Chr8	4859071	T-A	Hetero	INTERGENIC
SBS	Chr8	11189387	T-A	Homo	INTERGENIC
SBS	Chr9	4001072	C-T	Hetero	INTERGENIC
SBS	Chr9	16253390	C-T	Homo	INTERGENIC
SBS	Chr11	1003148	A-C	Hetero	INTERGENIC
SBS	Chr11	5228442	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g065800
SBS	Chr11	20384435	C-T	Hetero	INTERGENIC
SBS	Chr11	26879550	A-G	Hetero	INTERGENIC
SBS	Chr11	26879551	G-A	Hetero	INTERGENIC
SBS	Chr12	15581491	G-A	Homo	INTERGENIC
SBS	Chr12	19778375	C-T	Hetero	INTERGENIC
SBS	Chr1	426114	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	15935534	G-A	Hetero	INTERGENIC
SBS	Chr2	313616	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g004400
SBS	Chr2	8357782	A-G	Hetero	INTERGENIC
SBS	Chr2	9079254	T-C	Hetero	INTERGENIC
SBS	Chr2	9406228	C-G	Hetero	INTERGENIC
SBS	Chr2	15206281	G-T	Homo	INTERGENIC
SBS	Chr2	25671880	G-A	Hetero	INTERGENIC
SBS	Chr2	33719550	A-G	Hetero	INTERGENIC
SBS	Chr3	957439	T-A	Hetero	INTRON
SBS	Chr3	25020471	C-T	Homo	INTERGENIC
SBS	Chr4	5174598	C-T	Homo	INTERGENIC
SBS	Chr4	5876847	C-T	Homo	INTERGENIC
SBS	Chr4	25398950	C-T	Homo	INTERGENIC
SBS	Chr5	5111188	G-A	Hetero	INTERGENIC
SBS	Chr5	17344221	A-G	Hetero	INTERGENIC
SBS	Chr7	1467525	C-A	Hetero	INTERGENIC
SBS	Chr7	13673188	G-A	Hetero	INTERGENIC
SBS	Chr7	19719851	G-A	Hetero	INTERGENIC
SBS	Chr8	6777648	A-G	Hetero	INTERGENIC
SBS	Chr8	21709886	G-A	Hetero	INTRON
SBS	Chr8	28713180	G-A	Hetero	INTERGENIC
SBS	Chr9	1372164	G-A	Hetero	INTERGENIC
SBS	Chr10	9801146	A-T	Hetero	INTERGENIC
SBS	Chr10	9801147	C-T	Hetero	INTERGENIC
SBS	Chr10	12113443	G-A	Homo	INTERGENIC
SBS	Chr10	18312658	G-A	Hetero	INTRON
SBS	Chr10	20544771	C-T	Hetero	INTERGENIC
SBS	Chr11	1003148	A-C	Homo	INTERGENIC
SBS	Chr11	11034640	T-G	Homo	INTERGENIC
SBS	Chr11	23813122	T-A	Homo	INTRON
SBS	Chr12	4669150	G-A	Hetero	INTERGENIC
SBS	Chr12	7624888	C-T	Hetero	INTERGENIC
SBS	Chr12	7690132	C-T	Hetero	INTERGENIC
SBS	Chr12	16834608	G-A	Hetero	INTERGENIC
SBS	Chr12	21291680	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	130528	130531	3
Deletion	Chr9	457855	457856	1	OsKitaake09g003700
Deletion	Chr3	667785	667787	2
Deletion	Chr3	2412681	2412682	1
Deletion	Chr7	5295296	5295297	1
Deletion	Chr7	8432212	8432214	2
Deletion	Chr12	8900280	8900282	2
Deletion	Chr7	9375266	9375271	5
Deletion	Chr9	12106349	12106358	9
Deletion	Chr10	12239751	12239755	4
Deletion	Chr5	12277168	12277176	8
Deletion	Chr10	12810001	12814000	3999
Deletion	Chr7	14524402	14524403	1
Deletion	Chr2	15390858	15390861	3
Deletion	Chr6	15557001	15579000	21999
Deletion	Chr12	15651388	15651394	6
Deletion	Chr8	16107780	16107785	5
Deletion	Chr3	16670223	16670230	7
Deletion	Chr10	18328731	18328749	18
Deletion	Chr5	18944182	18944187	5
Deletion	Chr7	19757774	19757776	2
Deletion	Chr4	19980370	19980372	2
Deletion	Chr2	20696091	20696092	1
Deletion	Chr1	20902220	20902240	20
Deletion	Chr6	21488060	21488065	5
Deletion	Chr1	21894523	21894525	2	OsKitaake01g210900
Deletion	Chr6	22004672	22004674	2
Deletion	Chr6	29018001	29053000	34999
Deletion	Chr1	30496757	30496762	5
Deletion	Chr1	42867003	42867010	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	9721318	9747750	OsKitaake09g059200
Inversion	Chr1	22779310	22783042
Inversion	Chr1	22779322	22783047
Inversion	Chr6	29164764	29736755	2
Inversion	Chr6	29164771	29736760	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes