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Mutant Information

Mutant Name	FN3312-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3312-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11218198 C-T Hetero INTERGENIC
SBS Chr1 19133368 A-T Hetero INTERGENIC
SBS Chr1 21048444 A-G Hetero INTRON
SBS Chr1 21567268 G-A Hetero INTERGENIC
SBS Chr1 23179101 T-A Hetero INTERGENIC
SBS Chr2 4775447 T-A Homo INTERGENIC
SBS Chr2 6094224 G-A Hetero INTERGENIC
SBS Chr2 8843560 A-T Hetero INTERGENIC
SBS Chr2 10027005 T-A Hetero INTRON
SBS Chr2 10027007 G-A Hetero INTRON
SBS Chr2 12843909 A-T Hetero INTRON
SBS Chr2 17578590 C-A Hetero INTERGENIC
SBS Chr2 27243668 C-T Hetero INTERGENIC
SBS Chr3 1418125 C-T Hetero INTERGENIC
SBS Chr3 4319905 T-A Hetero UTR_3_PRIME
SBS Chr3 18409970 A-T Hetero INTERGENIC
SBS Chr3 19243909 C-T Hetero INTERGENIC
SBS Chr3 30660660 T-G Hetero INTRON
SBS Chr4 10777450 G-T Hetero INTERGENIC
SBS Chr4 10836251 G-A Hetero INTERGENIC
SBS Chr4 11869393 G-A Hetero INTERGENIC
SBS Chr4 17606243 C-A Hetero INTERGENIC
SBS Chr5 16030014 G-T Hetero INTERGENIC
SBS Chr5 18407722 T-C Hetero INTERGENIC
SBS Chr5 21664492 G-A Hetero UTR_5_PRIME
SBS Chr5 23278674 G-A Hetero INTERGENIC
SBS Chr5 29426536 A-G Hetero INTERGENIC
SBS Chr6 7769723 C-T Hetero INTRON
SBS Chr6 25488236 T-A Hetero INTERGENIC
SBS Chr7 62875 C-A Hetero INTERGENIC
SBS Chr7 8463088 G-A Hetero INTERGENIC
SBS Chr7 17747204 T-C Hetero INTERGENIC
SBS Chr7 23275395 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 23623119 C-A Hetero INTERGENIC
SBS Chr7 26741601 A-T Hetero INTRON
SBS Chr8 14813197 A-G Hetero INTERGENIC
SBS Chr8 23633546 T-A Hetero INTERGENIC
SBS Chr8 27291889 T-C Hetero INTERGENIC
SBS Chr8 28935587 A-G Hetero INTERGENIC
SBS Chr9 6366211 G-C Hetero INTERGENIC
SBS Chr9 11617956 G-A Hetero INTERGENIC
SBS Chr10 3811746 A-G Hetero INTERGENIC
SBS Chr10 10351011 T-A Hetero INTERGENIC
SBS Chr10 23075212 T-C Hetero INTRON
SBS Chr12 9138488 G-A Hetero INTERGENIC
SBS Chr12 13206963 C-T Homo INTERGENIC
SBS Chr12 17657106 A-C Hetero UTR_3_PRIME
SBS Chr12 18697694 G-C Hetero INTRON
SBS Chr12 22072644 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 220793 220802 9
Deletion Chr10 624398 624404 6
Deletion Chr1 890249 890252 3 OsKitaake01g010000
Deletion Chr3 6574001 6590000 15999 2
Deletion Chr8 8047562 8047570 8
Deletion Chr12 12328001 12720000 391999 21
Deletion Chr6 13586964 13586966 2
Deletion Chr8 13869053 13869058 5
Deletion Chr7 16563001 16576000 12999 3
Deletion Chr3 18086001 18109000 22999 2
Deletion Chr5 18404391 18404399 8 OsKitaake05g143400
Deletion Chr8 21520823 21520827 4
Deletion Chr3 35382062 35382063 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30401076 30401079 2
Insertion Chr5 318334 318337 2
Insertion Chr6 6313680 6313688 7
Insertion Chr12 1707000 1707003 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 16582305 16587702

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 16576145 Chr4 23093007
Translocation Chr7 16576626 Chr4 23092983
Translocation Chr10 17174392 Chr7 25025173 OsKitaake10g117400
Translocation Chr10 17174718 Chr7 25025177 OsKitaake10g117400
Translocation Chr9 20246296 Chr4 10802740
Translocation Chr12 21472814 Chr7 16666327
Translocation Chr12 21473267 Chr7 16563522
Translocation Chr12 24573682 Chr7 16576643 OsKitaake12g198800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11218198	C-T	Hetero	INTERGENIC
SBS	Chr1	19133368	A-T	Hetero	INTERGENIC
SBS	Chr1	21048444	A-G	Hetero	INTRON
SBS	Chr1	21567268	G-A	Hetero	INTERGENIC
SBS	Chr1	23179101	T-A	Hetero	INTERGENIC
SBS	Chr2	4775447	T-A	Homo	INTERGENIC
SBS	Chr2	6094224	G-A	Hetero	INTERGENIC
SBS	Chr2	8843560	A-T	Hetero	INTERGENIC
SBS	Chr2	10027005	T-A	Hetero	INTRON
SBS	Chr2	10027007	G-A	Hetero	INTRON
SBS	Chr2	12843909	A-T	Hetero	INTRON
SBS	Chr2	17578590	C-A	Hetero	INTERGENIC
SBS	Chr2	27243668	C-T	Hetero	INTERGENIC
SBS	Chr3	1418125	C-T	Hetero	INTERGENIC
SBS	Chr3	4319905	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	18409970	A-T	Hetero	INTERGENIC
SBS	Chr3	19243909	C-T	Hetero	INTERGENIC
SBS	Chr3	30660660	T-G	Hetero	INTRON
SBS	Chr4	10777450	G-T	Hetero	INTERGENIC
SBS	Chr4	10836251	G-A	Hetero	INTERGENIC
SBS	Chr4	11869393	G-A	Hetero	INTERGENIC
SBS	Chr4	17606243	C-A	Hetero	INTERGENIC
SBS	Chr5	16030014	G-T	Hetero	INTERGENIC
SBS	Chr5	18407722	T-C	Hetero	INTERGENIC
SBS	Chr5	21664492	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	23278674	G-A	Hetero	INTERGENIC
SBS	Chr5	29426536	A-G	Hetero	INTERGENIC
SBS	Chr6	7769723	C-T	Hetero	INTRON
SBS	Chr6	25488236	T-A	Hetero	INTERGENIC
SBS	Chr7	62875	C-A	Hetero	INTERGENIC
SBS	Chr7	8463088	G-A	Hetero	INTERGENIC
SBS	Chr7	17747204	T-C	Hetero	INTERGENIC
SBS	Chr7	23275395	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	23623119	C-A	Hetero	INTERGENIC
SBS	Chr7	26741601	A-T	Hetero	INTRON
SBS	Chr8	14813197	A-G	Hetero	INTERGENIC
SBS	Chr8	23633546	T-A	Hetero	INTERGENIC
SBS	Chr8	27291889	T-C	Hetero	INTERGENIC
SBS	Chr8	28935587	A-G	Hetero	INTERGENIC
SBS	Chr9	6366211	G-C	Hetero	INTERGENIC
SBS	Chr9	11617956	G-A	Hetero	INTERGENIC
SBS	Chr10	3811746	A-G	Hetero	INTERGENIC
SBS	Chr10	10351011	T-A	Hetero	INTERGENIC
SBS	Chr10	23075212	T-C	Hetero	INTRON
SBS	Chr12	9138488	G-A	Hetero	INTERGENIC
SBS	Chr12	13206963	C-T	Homo	INTERGENIC
SBS	Chr12	17657106	A-C	Hetero	UTR_3_PRIME
SBS	Chr12	18697694	G-C	Hetero	INTRON
SBS	Chr12	22072644	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	220793	220802	9
Deletion	Chr10	624398	624404	6
Deletion	Chr1	890249	890252	3	OsKitaake01g010000
Deletion	Chr3	6574001	6590000	15999	2
Deletion	Chr8	8047562	8047570	8
Deletion	Chr12	12328001	12720000	391999	21
Deletion	Chr6	13586964	13586966	2
Deletion	Chr8	13869053	13869058	5
Deletion	Chr7	16563001	16576000	12999	3
Deletion	Chr3	18086001	18109000	22999	2
Deletion	Chr5	18404391	18404399	8	OsKitaake05g143400
Deletion	Chr8	21520823	21520827	4
Deletion	Chr3	35382062	35382063	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	16582305	16587702

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes