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| Mutant Information |
|---|
| Mutant Name | FN3316-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3316-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22876802 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29916865 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g293701 |
| SBS | Chr2 | 14305374 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 25734313 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 1035814 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 14639404 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 17794481 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 22905809 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 1921210 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18184468 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32860566 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 18114196 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13250077 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 30157230 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 8219898 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27581692 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g257000 |
| SBS | Chr8 | 22318371 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 22763869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 23014679 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 27519063 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 27711274 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 28078889 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g235900 |
| SBS | Chr9 | 7353617 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7459870 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 11669170 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18045895 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18479849 | A-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr11 | 13154170 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 14402449 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17358717 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 4944503 | G-A | Hetero | INTRON | |
| SBS | Chr12 | 10394627 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17671506 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 24224737 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26017404 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 26801466 | G-C | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3719001 | 3750000 | 30999 | 4 |
| Deletion | Chr12 | 4661614 | 4661619 | 5 | OsKitaake12g061600 |
| Deletion | Chr3 | 6028760 | 6028768 | 8 | |
| Deletion | Chr3 | 6779196 | 6779200 | 4 | |
| Deletion | Chr3 | 6866521 | 6866522 | 1 | |
| Deletion | Chr4 | 11035158 | 11035175 | 17 | |
| Deletion | Chr10 | 11743310 | 11743317 | 7 | |
| Deletion | Chr12 | 12706404 | 12706407 | 3 | |
| Deletion | Chr2 | 13326700 | 13326707 | 7 | |
| Deletion | Chr1 | 15428093 | 15428107 | 14 | OsKitaake01g168600 |
| Deletion | Chr9 | 18050016 | 18050022 | 6 | |
| Deletion | Chr11 | 25465730 | 25465745 | 15 | |
| Deletion | Chr4 | 27661001 | 27674000 | 12999 | OsKitaake04g203600 |
| Deletion | Chr3 | 27998001 | 28011000 | 12999 | OsKitaake03g289900 |
| Deletion | Chr2 | 35100329 | 35100330 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 23382250 | 23382252 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 8571846 | 8606833 | |
| Inversion | Chr11 | 29414448 | 29583731 | |
| Inversion | Chr11 | 29414452 | 29583733 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 8595578 | Chr4 | 20932536 | |
| Translocation | Chr12 | 8606884 | Chr4 | 20932317 |