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| Mutant Information |
|---|
| Mutant Name | FN3319-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3319-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 24532776 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 8469963 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 15015977 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17018864 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 19811294 | C-T | Homo | INTRON | |
| SBS | Chr2 | 20003327 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27793449 | T-G | Hetero | INTRON | |
| SBS | Chr3 | 15101872 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17996573 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 30475716 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 34537636 | G-T | Hetero | INTRON | |
| SBS | Chr3 | 37181406 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 4126000 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16987869 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26998947 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 11172901 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g095000 |
| SBS | Chr5 | 18854001 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1456840 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2135512 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g027300 |
| SBS | Chr7 | 13977886 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 18845633 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 22729055 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 25187504 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21670278 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 17604637 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr9 | 17628909 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 17768208 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 18628215 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 4526580 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g033600 |
| SBS | Chr10 | 13067840 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17882736 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5270060 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 6554301 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 13128315 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 14435316 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21725005 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9581961 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19889050 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 19889051 | C-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 3999125 | 3999133 | 8 | |
| Deletion | Chr3 | 10048880 | 10048883 | 3 | |
| Deletion | Chr8 | 13050506 | 13050518 | 12 | |
| Deletion | Chr3 | 13300818 | 13300831 | 13 | |
| Deletion | Chr9 | 13611238 | 13611240 | 2 | |
| Deletion | Chr9 | 14642133 | 14642139 | 6 | OsKitaake09g100100 |
| Deletion | Chr5 | 19517097 | 19517098 | 1 | OsKitaake05g153600 |
| Deletion | Chr1 | 21765311 | 21765312 | 1 | |
| Deletion | Chr1 | 36200765 | 36200767 | 2 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 1396065 | 1396067 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 11637121 | 12215414 |