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Mutant Information

Mutant Name	FN3322-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3322-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1809824 C-T Hetero INTERGENIC
SBS Chr1 20963036 G-T Hetero INTERGENIC
SBS Chr1 24422738 C-T Hetero INTERGENIC
SBS Chr1 36945472 G-A Hetero INTERGENIC
SBS Chr2 714004 C-T Hetero INTRON
SBS Chr2 6556560 C-T Hetero INTERGENIC
SBS Chr3 14019164 G-A Homo INTERGENIC
SBS Chr3 20298340 G-C Homo INTERGENIC
SBS Chr3 32137437 T-G Hetero INTERGENIC
SBS Chr4 27131846 C-T Homo INTERGENIC
SBS Chr6 25998074 A-G Hetero INTRON
SBS Chr7 14243805 G-A Hetero UTR_3_PRIME
SBS Chr7 14594152 C-A Homo INTERGENIC
SBS Chr8 23392480 C-T Homo INTRON
SBS Chr9 4089160 G-A Homo INTERGENIC
SBS Chr9 11091502 G-A Homo INTRON
SBS Chr9 15858865 G-A Hetero INTERGENIC
SBS Chr9 22270554 T-C Hetero INTERGENIC
SBS Chr10 18752338 A-T Hetero INTERGENIC
SBS Chr11 14556469 T-A Hetero INTERGENIC
SBS Chr11 18675365 C-T Hetero INTERGENIC
SBS Chr11 19644218 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 4987392 C-T Hetero SYNONYMOUS_CODING
SBS Chr12 12920713 A-G Homo INTERGENIC
SBS Chr12 17571502 G-T Hetero INTERGENIC
SBS Chr12 26335487 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 11759933 11759937 4
Deletion Chr12 12926001 13664000 737999 45
Deletion Chr10 13264002 13264003 1
Deletion Chr1 15362001 15393000 30999 2
Deletion Chr3 16126673 16126684 11
Deletion Chr7 16554526 16554531 5
Deletion Chr8 21980817 21980821 4
Deletion Chr2 32444111 32444112 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 19018346 19018349 2
Insertion Chr9 9798990 9798994 3

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5012790 Chr4 3828209
Translocation Chr11 23031502 Chr9 22267550 2
Translocation Chr11 23085298 Chr9 22267545 OsKitaake09g201400
Translocation Chr8 23550096 Chr5 23677718
Translocation Chr8 23550109 Chr5 23677198

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1809824	C-T	Hetero	INTERGENIC
SBS	Chr1	20963036	G-T	Hetero	INTERGENIC
SBS	Chr1	24422738	C-T	Hetero	INTERGENIC
SBS	Chr1	36945472	G-A	Hetero	INTERGENIC
SBS	Chr2	714004	C-T	Hetero	INTRON
SBS	Chr2	6556560	C-T	Hetero	INTERGENIC
SBS	Chr3	14019164	G-A	Homo	INTERGENIC
SBS	Chr3	20298340	G-C	Homo	INTERGENIC
SBS	Chr3	32137437	T-G	Hetero	INTERGENIC
SBS	Chr4	27131846	C-T	Homo	INTERGENIC
SBS	Chr6	25998074	A-G	Hetero	INTRON
SBS	Chr7	14243805	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	14594152	C-A	Homo	INTERGENIC
SBS	Chr8	23392480	C-T	Homo	INTRON
SBS	Chr9	4089160	G-A	Homo	INTERGENIC
SBS	Chr9	11091502	G-A	Homo	INTRON
SBS	Chr9	15858865	G-A	Hetero	INTERGENIC
SBS	Chr9	22270554	T-C	Hetero	INTERGENIC
SBS	Chr10	18752338	A-T	Hetero	INTERGENIC
SBS	Chr11	14556469	T-A	Hetero	INTERGENIC
SBS	Chr11	18675365	C-T	Hetero	INTERGENIC
SBS	Chr11	19644218	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	4987392	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12920713	A-G	Homo	INTERGENIC
SBS	Chr12	17571502	G-T	Hetero	INTERGENIC
SBS	Chr12	26335487	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	11759933	11759937	4
Deletion	Chr12	12926001	13664000	737999	45
Deletion	Chr10	13264002	13264003	1
Deletion	Chr1	15362001	15393000	30999	2
Deletion	Chr3	16126673	16126684	11
Deletion	Chr7	16554526	16554531	5
Deletion	Chr8	21980817	21980821	4
Deletion	Chr2	32444111	32444112	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	5012790	Chr4	3828209
Translocation	Chr11	23031502	Chr9	22267550	2
Translocation	Chr11	23085298	Chr9	22267545	OsKitaake09g201400
Translocation	Chr8	23550096	Chr5	23677718
Translocation	Chr8	23550109	Chr5	23677198

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes