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Mutant Information

Mutant Name	FN3323-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3323-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23149305 C-T Hetero INTERGENIC
SBS Chr1 29297759 G-T Hetero INTRON
SBS Chr1 36728251 T-C Hetero INTERGENIC
SBS Chr2 32837447 A-T Hetero INTERGENIC
SBS Chr2 34153611 A-G Homo INTERGENIC
SBS Chr2 37107799 C-T Homo INTERGENIC
SBS Chr3 12049116 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g163800
SBS Chr3 20757564 A-T Hetero INTERGENIC
SBS Chr3 21943413 G-C Hetero INTERGENIC
SBS Chr3 25737222 G-A Homo INTRON
SBS Chr3 33313859 G-A Hetero INTERGENIC
SBS Chr3 34332025 C-T Hetero INTERGENIC
SBS Chr3 34332027 T-G Hetero INTERGENIC
SBS Chr3 37313929 A-G Hetero INTERGENIC
SBS Chr4 8288954 C-T Hetero INTRON
SBS Chr4 14577377 A-C Hetero INTERGENIC
SBS Chr5 1259219 G-A Hetero INTERGENIC
SBS Chr5 6052683 C-T Hetero INTERGENIC
SBS Chr5 13861842 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g107500
SBS Chr5 25350912 T-C Hetero INTERGENIC
SBS Chr6 2655585 C-A Hetero INTERGENIC
SBS Chr6 7765245 C-T Hetero INTERGENIC
SBS Chr6 14912305 G-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Hetero INTRON
SBS Chr6 22098279 G-C Hetero INTERGENIC
SBS Chr7 2725358 G-C Hetero INTERGENIC
SBS Chr7 14673429 G-A Hetero INTERGENIC
SBS Chr8 232273 T-A Hetero SYNONYMOUS_CODING
SBS Chr8 1683438 T-A Hetero INTERGENIC
SBS Chr8 1739610 G-C Hetero INTERGENIC
SBS Chr8 3294865 T-C Hetero INTERGENIC
SBS Chr8 7227254 C-A Homo NON_SYNONYMOUS_CODING OsKitaake08g069621
SBS Chr8 9396490 T-G Hetero INTERGENIC
SBS Chr9 8639775 G-T Hetero INTERGENIC
SBS Chr10 13116783 T-C Hetero INTERGENIC
SBS Chr10 13116794 C-T Hetero INTERGENIC
SBS Chr10 17784067 G-T Hetero INTERGENIC
SBS Chr11 25276403 C-T Hetero INTERGENIC
SBS Chr12 5051237 T-A Hetero INTERGENIC
SBS Chr12 8540212 C-T Hetero INTERGENIC
SBS Chr12 11494099 G-A Hetero INTRON
SBS Chr12 12847937 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g108300

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2853842 2853850 8
Deletion Chr9 11993676 11993682 6
Deletion Chr9 17171131 17171137 6
Deletion Chr3 19830488 19830494 6
Deletion Chr5 20400001 20416000 15999
Deletion Chr4 22955856 22955866 10 OsKitaake04g138900
Deletion Chr11 24342192 24342230 38
Deletion Chr1 30444899 30445096 197

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 24283863 24283866 2
Insertion Chr4 20838522 20838529 6

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 2367280 Chr1 7281593
Translocation Chr12 2490670 Chr1 7281598

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23149305	C-T	Hetero	INTERGENIC
SBS	Chr1	29297759	G-T	Hetero	INTRON
SBS	Chr1	36728251	T-C	Hetero	INTERGENIC
SBS	Chr2	32837447	A-T	Hetero	INTERGENIC
SBS	Chr2	34153611	A-G	Homo	INTERGENIC
SBS	Chr2	37107799	C-T	Homo	INTERGENIC
SBS	Chr3	12049116	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g163800
SBS	Chr3	20757564	A-T	Hetero	INTERGENIC
SBS	Chr3	21943413	G-C	Hetero	INTERGENIC
SBS	Chr3	25737222	G-A	Homo	INTRON
SBS	Chr3	33313859	G-A	Hetero	INTERGENIC
SBS	Chr3	34332025	C-T	Hetero	INTERGENIC
SBS	Chr3	34332027	T-G	Hetero	INTERGENIC
SBS	Chr3	37313929	A-G	Hetero	INTERGENIC
SBS	Chr4	8288954	C-T	Hetero	INTRON
SBS	Chr4	14577377	A-C	Hetero	INTERGENIC
SBS	Chr5	1259219	G-A	Hetero	INTERGENIC
SBS	Chr5	6052683	C-T	Hetero	INTERGENIC
SBS	Chr5	13861842	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g107500
SBS	Chr5	25350912	T-C	Hetero	INTERGENIC
SBS	Chr6	2655585	C-A	Hetero	INTERGENIC
SBS	Chr6	7765245	C-T	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Hetero	INTRON
SBS	Chr6	22098279	G-C	Hetero	INTERGENIC
SBS	Chr7	2725358	G-C	Hetero	INTERGENIC
SBS	Chr7	14673429	G-A	Hetero	INTERGENIC
SBS	Chr8	232273	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	1683438	T-A	Hetero	INTERGENIC
SBS	Chr8	1739610	G-C	Hetero	INTERGENIC
SBS	Chr8	3294865	T-C	Hetero	INTERGENIC
SBS	Chr8	7227254	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g069621
SBS	Chr8	9396490	T-G	Hetero	INTERGENIC
SBS	Chr9	8639775	G-T	Hetero	INTERGENIC
SBS	Chr10	13116783	T-C	Hetero	INTERGENIC
SBS	Chr10	13116794	C-T	Hetero	INTERGENIC
SBS	Chr10	17784067	G-T	Hetero	INTERGENIC
SBS	Chr11	25276403	C-T	Hetero	INTERGENIC
SBS	Chr12	5051237	T-A	Hetero	INTERGENIC
SBS	Chr12	8540212	C-T	Hetero	INTERGENIC
SBS	Chr12	11494099	G-A	Hetero	INTRON
SBS	Chr12	12847937	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g108300

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2853842	2853850	8
Deletion	Chr9	11993676	11993682	6
Deletion	Chr9	17171131	17171137	6
Deletion	Chr3	19830488	19830494	6
Deletion	Chr5	20400001	20416000	15999
Deletion	Chr4	22955856	22955866	10	OsKitaake04g138900
Deletion	Chr11	24342192	24342230	38
Deletion	Chr1	30444899	30445096	197

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2367280	Chr1	7281593
Translocation	Chr12	2490670	Chr1	7281598

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes