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Mutant Information

Mutant Name	FN3324-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3324-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7094843 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g088700
SBS Chr1 18662345 T-A Homo INTERGENIC
SBS Chr1 42196347 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 20634189 G-A Homo INTERGENIC
SBS Chr3 3156573 C-T Homo INTERGENIC
SBS Chr3 7873654 C-A Hetero INTERGENIC
SBS Chr3 12424925 T-G Hetero INTRON
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 26529316 T-G Hetero INTERGENIC
SBS Chr4 9165725 C-T Hetero INTERGENIC
SBS Chr4 19722878 C-T Homo INTERGENIC
SBS Chr4 35581046 G-A Homo INTERGENIC
SBS Chr5 905642 C-T Hetero INTERGENIC
SBS Chr5 4021210 A-T Hetero INTERGENIC
SBS Chr5 11362374 G-A Hetero INTERGENIC
SBS Chr5 19459582 A-G Hetero INTERGENIC
SBS Chr5 20987666 C-T Hetero INTRON
SBS Chr5 20987667 A-T Hetero INTRON
SBS Chr6 8699902 C-T Hetero INTERGENIC
SBS Chr6 15370639 G-C Homo INTERGENIC
SBS Chr6 16896534 G-A Homo INTERGENIC
SBS Chr6 26970847 T-C Hetero INTERGENIC
SBS Chr6 27968725 C-T Hetero INTERGENIC
SBS Chr7 13314591 A-T Hetero INTRON
SBS Chr7 17035088 C-T Hetero INTERGENIC
SBS Chr7 25292510 A-G Hetero INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr8 13785619 G-A Homo INTERGENIC
SBS Chr8 16059033 C-T Homo INTERGENIC
SBS Chr8 26076871 T-C Hetero INTERGENIC
SBS Chr9 20575814 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g174200
SBS Chr10 1125655 G-C Hetero INTERGENIC
SBS Chr11 225589 T-C Hetero INTRON
SBS Chr11 4523466 C-T Hetero INTERGENIC
SBS Chr11 17620360 T-C Homo INTERGENIC
SBS Chr11 25568059 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 5447420 5447427 7
Deletion Chr6 5494999 5495002 3
Deletion Chr3 9840480 9840500 20
Deletion Chr6 12541506 12541508 2
Deletion Chr11 14619329 14619331 2
Deletion Chr9 19650001 19793000 142999 36
Deletion Chr6 20429156 20429161 5
Deletion Chr5 27924869 27924871 2
Deletion Chr1 33767151 33767153 2 OsKitaake01g346700
Deletion Chr1 37145170 37145176 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17647287 17647291 3
Insertion Chr2 29830062 29830065 2
Insertion Chr3 23767100 23767103 2
Insertion Chr8 15843248 15843251 2
Insertion Chr12 20525368 20525371 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 4341533 4460612
Inversion Chr10 20156997 20720679
Inversion Chr10 20157000 20720681

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 4522379 Chr2 7570840
Translocation Chr11 4522445 Chr2 7573998 OsKitaake02g099800
Translocation Chr5 7240238 Chr4 19703232 OsKitaake04g102600
Translocation Chr5 7535776 Chr4 19703234 OsKitaake04g102600
Translocation Chr9 20566889 Chr4 22005182 2
Translocation Chr9 20571232 Chr4 22003452
Translocation Chr9 20571247 Chr7 26184011
Translocation Chr9 20573262 Chr7 26184009 OsKitaake09g174100
Translocation Chr8 27206221 Chr3 24680738 2
Translocation Chr8 27206947 Chr1 4341548 OsKitaake08g223300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7094843	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g088700
SBS	Chr1	18662345	T-A	Homo	INTERGENIC
SBS	Chr1	42196347	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	20634189	G-A	Homo	INTERGENIC
SBS	Chr3	3156573	C-T	Homo	INTERGENIC
SBS	Chr3	7873654	C-A	Hetero	INTERGENIC
SBS	Chr3	12424925	T-G	Hetero	INTRON
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	26529316	T-G	Hetero	INTERGENIC
SBS	Chr4	9165725	C-T	Hetero	INTERGENIC
SBS	Chr4	19722878	C-T	Homo	INTERGENIC
SBS	Chr4	35581046	G-A	Homo	INTERGENIC
SBS	Chr5	905642	C-T	Hetero	INTERGENIC
SBS	Chr5	4021210	A-T	Hetero	INTERGENIC
SBS	Chr5	11362374	G-A	Hetero	INTERGENIC
SBS	Chr5	19459582	A-G	Hetero	INTERGENIC
SBS	Chr5	20987666	C-T	Hetero	INTRON
SBS	Chr5	20987667	A-T	Hetero	INTRON
SBS	Chr6	8699902	C-T	Hetero	INTERGENIC
SBS	Chr6	15370639	G-C	Homo	INTERGENIC
SBS	Chr6	16896534	G-A	Homo	INTERGENIC
SBS	Chr6	26970847	T-C	Hetero	INTERGENIC
SBS	Chr6	27968725	C-T	Hetero	INTERGENIC
SBS	Chr7	13314591	A-T	Hetero	INTRON
SBS	Chr7	17035088	C-T	Hetero	INTERGENIC
SBS	Chr7	25292510	A-G	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr8	13785619	G-A	Homo	INTERGENIC
SBS	Chr8	16059033	C-T	Homo	INTERGENIC
SBS	Chr8	26076871	T-C	Hetero	INTERGENIC
SBS	Chr9	20575814	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g174200
SBS	Chr10	1125655	G-C	Hetero	INTERGENIC
SBS	Chr11	225589	T-C	Hetero	INTRON
SBS	Chr11	4523466	C-T	Hetero	INTERGENIC
SBS	Chr11	17620360	T-C	Homo	INTERGENIC
SBS	Chr11	25568059	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	5447420	5447427	7
Deletion	Chr6	5494999	5495002	3
Deletion	Chr3	9840480	9840500	20
Deletion	Chr6	12541506	12541508	2
Deletion	Chr11	14619329	14619331	2
Deletion	Chr9	19650001	19793000	142999	36
Deletion	Chr6	20429156	20429161	5
Deletion	Chr5	27924869	27924871	2
Deletion	Chr1	33767151	33767153	2	OsKitaake01g346700
Deletion	Chr1	37145170	37145176	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	4341533	4460612
Inversion	Chr10	20156997	20720679
Inversion	Chr10	20157000	20720681

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes