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Mutant Information

Mutant Name	FN3325-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3325-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7853717 C-G Hetero INTERGENIC
SBS Chr1 13785437 T-A Hetero INTERGENIC
SBS Chr1 16759762 A-G Hetero INTERGENIC
SBS Chr1 35676845 G-A Hetero INTERGENIC
SBS Chr1 41737453 T-C Hetero INTERGENIC
SBS Chr1 41986833 C-A Hetero INTERGENIC
SBS Chr2 9061648 C-T Hetero INTERGENIC
SBS Chr2 18937618 C-T Hetero INTERGENIC
SBS Chr2 21953789 G-T Hetero INTERGENIC
SBS Chr2 26739094 A-T Hetero INTERGENIC
SBS Chr3 2793901 C-A Hetero INTERGENIC
SBS Chr3 5584768 A-G Hetero INTERGENIC
SBS Chr3 14898833 G-A Homo INTRON
SBS Chr3 16752567 C-T Homo INTERGENIC
SBS Chr3 18928983 C-T Hetero INTERGENIC
SBS Chr3 31570492 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 37138997 G-A Hetero INTRON
SBS Chr4 17965517 G-A Hetero INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr4 27280586 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g198600
SBS Chr5 12931138 G-A Hetero INTERGENIC
SBS Chr5 18727328 A-T Homo INTERGENIC
SBS Chr5 23662703 G-C Hetero INTERGENIC
SBS Chr5 25261988 G-T Hetero INTERGENIC
SBS Chr5 29555304 C-A Hetero INTERGENIC
SBS Chr6 10165221 A-G Hetero INTERGENIC
SBS Chr6 17466136 T-C Hetero INTERGENIC
SBS Chr6 17560058 C-T Hetero INTERGENIC
SBS Chr6 28046605 A-C Homo INTERGENIC
SBS Chr7 4331580 A-T Homo INTERGENIC
SBS Chr7 20971293 G-A Hetero INTERGENIC
SBS Chr7 22650879 C-A Hetero INTERGENIC
SBS Chr8 7111820 C-A Homo INTERGENIC
SBS Chr8 11799970 C-T Homo INTERGENIC
SBS Chr9 2820720 G-A Hetero INTERGENIC
SBS Chr9 11648301 G-A Hetero INTERGENIC
SBS Chr9 11661749 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g074500
SBS Chr9 19065791 G-A Hetero INTERGENIC
SBS Chr9 19335347 T-A Hetero INTRON
SBS Chr10 76446 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g000300
SBS Chr10 8104147 C-A Hetero INTERGENIC
SBS Chr11 8133093 C-A Hetero INTERGENIC
SBS Chr11 16448343 G-T Homo INTERGENIC
SBS Chr11 20529367 G-T Homo SYNONYMOUS_CODING
SBS Chr11 22822440 A-G Hetero INTERGENIC
SBS Chr12 10975475 T-G Hetero INTERGENIC
SBS Chr12 21889227 G-C Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2364478 2365056 578
Deletion Chr12 3569321 3569322 1
Deletion Chr8 4853022 4853024 2
Deletion Chr9 7003687 7003689 2
Deletion Chr10 8876572 8876574 2
Deletion Chr3 9822650 9822662 12
Deletion Chr9 12268703 12268708 5
Deletion Chr10 12453520 12453525 5
Deletion Chr3 15744420 15744432 12
Deletion Chr12 16556648 16556652 4
Deletion Chr5 16754851 16754856 5
Deletion Chr2 17065177 17065179 2
Deletion Chr12 23286357 23286382 25 OsKitaake12g186200
Deletion Chr11 24439607 24439620 13
Deletion Chr2 27057505 27057511 6
Deletion Chr6 27275143 27275149 6
Deletion Chr2 27811809 27811810 1
Deletion Chr2 29915322 29915323 1
Deletion Chr4 31115431 31115432 1
Deletion Chr3 36371796 36371798 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 8005993 8005998 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 904185 910604
Inversion Chr10 904233 910608
Inversion Chr6 13675105 13852982
Inversion Chr6 13675110 13854025

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 13978203 Chr2 20772204 OsKitaake02g201300
Translocation Chr7 13983494 Chr2 20772232 OsKitaake02g201300
Translocation Chr9 14461857 Chr3 1659938 OsKitaake03g023500
Translocation Chr6 25790898 Chr5 15093519 OsKitaake06g229400
Translocation Chr6 25790902 Chr5 15087192 OsKitaake06g229400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7853717	C-G	Hetero	INTERGENIC
SBS	Chr1	13785437	T-A	Hetero	INTERGENIC
SBS	Chr1	16759762	A-G	Hetero	INTERGENIC
SBS	Chr1	35676845	G-A	Hetero	INTERGENIC
SBS	Chr1	41737453	T-C	Hetero	INTERGENIC
SBS	Chr1	41986833	C-A	Hetero	INTERGENIC
SBS	Chr2	9061648	C-T	Hetero	INTERGENIC
SBS	Chr2	18937618	C-T	Hetero	INTERGENIC
SBS	Chr2	21953789	G-T	Hetero	INTERGENIC
SBS	Chr2	26739094	A-T	Hetero	INTERGENIC
SBS	Chr3	2793901	C-A	Hetero	INTERGENIC
SBS	Chr3	5584768	A-G	Hetero	INTERGENIC
SBS	Chr3	14898833	G-A	Homo	INTRON
SBS	Chr3	16752567	C-T	Homo	INTERGENIC
SBS	Chr3	18928983	C-T	Hetero	INTERGENIC
SBS	Chr3	31570492	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	37138997	G-A	Hetero	INTRON
SBS	Chr4	17965517	G-A	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr4	27280586	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g198600
SBS	Chr5	12931138	G-A	Hetero	INTERGENIC
SBS	Chr5	18727328	A-T	Homo	INTERGENIC
SBS	Chr5	23662703	G-C	Hetero	INTERGENIC
SBS	Chr5	25261988	G-T	Hetero	INTERGENIC
SBS	Chr5	29555304	C-A	Hetero	INTERGENIC
SBS	Chr6	10165221	A-G	Hetero	INTERGENIC
SBS	Chr6	17466136	T-C	Hetero	INTERGENIC
SBS	Chr6	17560058	C-T	Hetero	INTERGENIC
SBS	Chr6	28046605	A-C	Homo	INTERGENIC
SBS	Chr7	4331580	A-T	Homo	INTERGENIC
SBS	Chr7	20971293	G-A	Hetero	INTERGENIC
SBS	Chr7	22650879	C-A	Hetero	INTERGENIC
SBS	Chr8	7111820	C-A	Homo	INTERGENIC
SBS	Chr8	11799970	C-T	Homo	INTERGENIC
SBS	Chr9	2820720	G-A	Hetero	INTERGENIC
SBS	Chr9	11648301	G-A	Hetero	INTERGENIC
SBS	Chr9	11661749	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g074500
SBS	Chr9	19065791	G-A	Hetero	INTERGENIC
SBS	Chr9	19335347	T-A	Hetero	INTRON
SBS	Chr10	76446	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g000300
SBS	Chr10	8104147	C-A	Hetero	INTERGENIC
SBS	Chr11	8133093	C-A	Hetero	INTERGENIC
SBS	Chr11	16448343	G-T	Homo	INTERGENIC
SBS	Chr11	20529367	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	22822440	A-G	Hetero	INTERGENIC
SBS	Chr12	10975475	T-G	Hetero	INTERGENIC
SBS	Chr12	21889227	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2364478	2365056	578
Deletion	Chr12	3569321	3569322	1
Deletion	Chr8	4853022	4853024	2
Deletion	Chr9	7003687	7003689	2
Deletion	Chr10	8876572	8876574	2
Deletion	Chr3	9822650	9822662	12
Deletion	Chr9	12268703	12268708	5
Deletion	Chr10	12453520	12453525	5
Deletion	Chr3	15744420	15744432	12
Deletion	Chr12	16556648	16556652	4
Deletion	Chr5	16754851	16754856	5
Deletion	Chr2	17065177	17065179	2
Deletion	Chr12	23286357	23286382	25	OsKitaake12g186200
Deletion	Chr11	24439607	24439620	13
Deletion	Chr2	27057505	27057511	6
Deletion	Chr6	27275143	27275149	6
Deletion	Chr2	27811809	27811810	1
Deletion	Chr2	29915322	29915323	1
Deletion	Chr4	31115431	31115432	1
Deletion	Chr3	36371796	36371798	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	904185	910604
Inversion	Chr10	904233	910608
Inversion	Chr6	13675105	13852982
Inversion	Chr6	13675110	13854025

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes