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Mutant Information

Mutant Name	FN3326-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3326-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 687286 T-G Hetero INTERGENIC
SBS Chr1 5783618 T-A Hetero INTERGENIC
SBS Chr1 22532244 A-C Homo NON_SYNONYMOUS_CODING OsKitaake01g215700
SBS Chr1 25201081 T-A Homo INTERGENIC
SBS Chr1 25934191 T-C Homo INTERGENIC
SBS Chr1 27655767 C-T Hetero INTERGENIC
SBS Chr1 36283909 T-C Homo INTERGENIC
SBS Chr1 42455634 C-A Hetero INTERGENIC
SBS Chr2 11683214 C-A Homo INTERGENIC
SBS Chr2 18835626 A-T Homo INTERGENIC
SBS Chr2 19680921 T-C Hetero INTERGENIC
SBS Chr2 26901360 C-T Homo INTERGENIC
SBS Chr2 33029122 C-T Hetero INTERGENIC
SBS Chr3 23099371 T-C Hetero INTERGENIC
SBS Chr3 28847361 C-T Homo INTERGENIC
SBS Chr3 29907284 A-T Hetero INTERGENIC
SBS Chr4 951994 C-T Hetero INTERGENIC
SBS Chr4 1500747 C-T Homo INTERGENIC
SBS Chr4 6334060 G-A Hetero INTRON
SBS Chr4 7479353 T-C Hetero INTERGENIC
SBS Chr4 28687386 C-T Homo INTERGENIC
SBS Chr4 30320794 C-T Hetero INTERGENIC
SBS Chr5 2965603 G-A Hetero INTERGENIC
SBS Chr5 15994890 G-C Homo INTERGENIC
SBS Chr6 17901965 G-A Hetero INTERGENIC
SBS Chr7 2439732 G-A Homo INTERGENIC
SBS Chr8 2811180 C-G Hetero UTR_3_PRIME
SBS Chr8 5145152 T-C Hetero INTERGENIC
SBS Chr8 6176608 C-G Hetero INTERGENIC
SBS Chr8 24106885 A-G Homo INTERGENIC
SBS Chr8 25918309 G-A Hetero INTERGENIC
SBS Chr8 28955900 G-T Hetero INTRON
SBS Chr8 28955901 C-T Hetero INTRON
SBS Chr9 11300645 A-G Homo INTERGENIC
SBS Chr9 12689549 C-T Hetero INTERGENIC
SBS Chr10 7448184 G-A Hetero INTERGENIC
SBS Chr10 11087411 A-G Hetero INTERGENIC
SBS Chr11 6860028 C-A Homo INTERGENIC
SBS Chr11 11786148 C-T Homo INTERGENIC
SBS Chr11 20504459 G-A Homo INTERGENIC
SBS Chr11 22987225 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g182600
SBS Chr11 25623304 C-T Hetero START_GAINED
SBS Chr12 13902592 C-T Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 231770 231771 1
Deletion Chr8 829001 858000 28999
Deletion Chr1 3164595 3164603 8
Deletion Chr12 5456179 5456184 5
Deletion Chr9 5715716 5715723 7
Deletion Chr2 6098409 6098423 14
Deletion Chr5 9833127 9833128 1
Deletion Chr3 11136589 11136590 1
Deletion Chr11 11766468 11766490 22
Deletion Chr11 12027744 12027758 14
Deletion Chr9 14241001 14260000 18999 2
Deletion Chr9 14925182 14925185 3
Deletion Chr8 14929374 14929387 13
Deletion Chr11 16874231 16874232 1
Deletion Chr12 18835133 18835135 2
Deletion Chr9 18840025 18840042 17
Deletion Chr7 18979906 18979907 1
Deletion Chr11 22109945 22109949 4
Deletion Chr3 24576726 24576742 16
Deletion Chr12 24584127 24584133 6
Deletion Chr3 27079526 27079527 1
Deletion Chr7 27530394 27530396 2
Deletion Chr1 29328840 29328844 4
Deletion Chr2 35522007 35522019 12
Deletion Chr1 43369841 43369842 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 26318668 26318671 2
Insertion Chr8 23709863 23709865 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 25145302 25298141
Inversion Chr3 25145310 25298148

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 23606899 Chr1 22170021
Translocation Chr8 23609819 Chr4 30539113

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	687286	T-G	Hetero	INTERGENIC
SBS	Chr1	5783618	T-A	Hetero	INTERGENIC
SBS	Chr1	22532244	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g215700
SBS	Chr1	25201081	T-A	Homo	INTERGENIC
SBS	Chr1	25934191	T-C	Homo	INTERGENIC
SBS	Chr1	27655767	C-T	Hetero	INTERGENIC
SBS	Chr1	36283909	T-C	Homo	INTERGENIC
SBS	Chr1	42455634	C-A	Hetero	INTERGENIC
SBS	Chr2	11683214	C-A	Homo	INTERGENIC
SBS	Chr2	18835626	A-T	Homo	INTERGENIC
SBS	Chr2	19680921	T-C	Hetero	INTERGENIC
SBS	Chr2	26901360	C-T	Homo	INTERGENIC
SBS	Chr2	33029122	C-T	Hetero	INTERGENIC
SBS	Chr3	23099371	T-C	Hetero	INTERGENIC
SBS	Chr3	28847361	C-T	Homo	INTERGENIC
SBS	Chr3	29907284	A-T	Hetero	INTERGENIC
SBS	Chr4	951994	C-T	Hetero	INTERGENIC
SBS	Chr4	1500747	C-T	Homo	INTERGENIC
SBS	Chr4	6334060	G-A	Hetero	INTRON
SBS	Chr4	7479353	T-C	Hetero	INTERGENIC
SBS	Chr4	28687386	C-T	Homo	INTERGENIC
SBS	Chr4	30320794	C-T	Hetero	INTERGENIC
SBS	Chr5	2965603	G-A	Hetero	INTERGENIC
SBS	Chr5	15994890	G-C	Homo	INTERGENIC
SBS	Chr6	17901965	G-A	Hetero	INTERGENIC
SBS	Chr7	2439732	G-A	Homo	INTERGENIC
SBS	Chr8	2811180	C-G	Hetero	UTR_3_PRIME
SBS	Chr8	5145152	T-C	Hetero	INTERGENIC
SBS	Chr8	6176608	C-G	Hetero	INTERGENIC
SBS	Chr8	24106885	A-G	Homo	INTERGENIC
SBS	Chr8	25918309	G-A	Hetero	INTERGENIC
SBS	Chr8	28955900	G-T	Hetero	INTRON
SBS	Chr8	28955901	C-T	Hetero	INTRON
SBS	Chr9	11300645	A-G	Homo	INTERGENIC
SBS	Chr9	12689549	C-T	Hetero	INTERGENIC
SBS	Chr10	7448184	G-A	Hetero	INTERGENIC
SBS	Chr10	11087411	A-G	Hetero	INTERGENIC
SBS	Chr11	6860028	C-A	Homo	INTERGENIC
SBS	Chr11	11786148	C-T	Homo	INTERGENIC
SBS	Chr11	20504459	G-A	Homo	INTERGENIC
SBS	Chr11	22987225	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g182600
SBS	Chr11	25623304	C-T	Hetero	START_GAINED
SBS	Chr12	13902592	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	231770	231771	1
Deletion	Chr8	829001	858000	28999
Deletion	Chr1	3164595	3164603	8
Deletion	Chr12	5456179	5456184	5
Deletion	Chr9	5715716	5715723	7
Deletion	Chr2	6098409	6098423	14
Deletion	Chr5	9833127	9833128	1
Deletion	Chr3	11136589	11136590	1
Deletion	Chr11	11766468	11766490	22
Deletion	Chr11	12027744	12027758	14
Deletion	Chr9	14241001	14260000	18999	2
Deletion	Chr9	14925182	14925185	3
Deletion	Chr8	14929374	14929387	13
Deletion	Chr11	16874231	16874232	1
Deletion	Chr12	18835133	18835135	2
Deletion	Chr9	18840025	18840042	17
Deletion	Chr7	18979906	18979907	1
Deletion	Chr11	22109945	22109949	4
Deletion	Chr3	24576726	24576742	16
Deletion	Chr12	24584127	24584133	6
Deletion	Chr3	27079526	27079527	1
Deletion	Chr7	27530394	27530396	2
Deletion	Chr1	29328840	29328844	4
Deletion	Chr2	35522007	35522019	12
Deletion	Chr1	43369841	43369842	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	25145302	25298141
Inversion	Chr3	25145310	25298148

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes