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Mutant Information

Mutant Name	FN3330-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3330-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5359649 C-A Hetero INTERGENIC
SBS Chr1 17548353 C-A Hetero INTERGENIC
SBS Chr1 28234644 T-C Homo INTERGENIC
SBS Chr3 25538459 G-A Hetero INTERGENIC
SBS Chr3 25638846 A-G Hetero INTERGENIC
SBS Chr3 26360128 C-T Hetero INTERGENIC
SBS Chr4 31230413 C-T Hetero INTERGENIC
SBS Chr5 17614002 C-T Homo INTRON
SBS Chr5 24080139 T-C Hetero INTERGENIC
SBS Chr5 25841171 G-T Hetero INTERGENIC
SBS Chr6 6742831 G-A Homo UTR_5_PRIME
SBS Chr6 6742832 C-A Homo UTR_5_PRIME
SBS Chr6 27126254 T-G Hetero INTERGENIC
SBS Chr7 11227712 G-A Hetero INTERGENIC
SBS Chr7 12886441 G-A Hetero INTERGENIC
SBS Chr7 21180123 G-C Hetero INTERGENIC
SBS Chr9 1303765 G-T Hetero INTERGENIC
SBS Chr9 3143483 G-A Hetero INTERGENIC
SBS Chr9 5102587 G-A Hetero INTERGENIC
SBS Chr9 5896487 C-G Hetero UTR_3_PRIME
SBS Chr9 12009825 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 4223288 G-C Homo NON_SYNONYMOUS_CODING OsKitaake10g032100
SBS Chr12 7505832 C-A Homo INTERGENIC
SBS Chr12 19838506 G-A Homo INTERGENIC
SBS Chr12 19838507 C-A Homo INTERGENIC
SBS Chr12 24140115 T-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1035654 1035656 2
Deletion Chr7 2380167 2380172 5
Deletion Chr4 2835049 2835053 4
Deletion Chr7 4187117 4187119 2
Deletion Chr11 4927378 4927382 4
Deletion Chr3 7110908 7110910 2
Deletion Chr5 9406557 9406561 4
Deletion Chr12 11032430 11032433 3
Deletion Chr8 13924848 13924849 1
Deletion Chr3 19793187 19793188 1
Deletion Chr2 21863402 21863406 4
Deletion Chr11 22701449 22701453 4
Deletion Chr12 23429830 23429834 4
Deletion Chr2 30602361 30602363 2
Deletion Chr1 40921456 40921461 5

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 5773855 5857627 OsKitaake09g033100
Inversion Chr9 5773869 5857636 OsKitaake09g033100
Inversion Chr5 7727738 8339117
Inversion Chr5 7727752 8339116

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5359649	C-A	Hetero	INTERGENIC
SBS	Chr1	17548353	C-A	Hetero	INTERGENIC
SBS	Chr1	28234644	T-C	Homo	INTERGENIC
SBS	Chr3	25538459	G-A	Hetero	INTERGENIC
SBS	Chr3	25638846	A-G	Hetero	INTERGENIC
SBS	Chr3	26360128	C-T	Hetero	INTERGENIC
SBS	Chr4	31230413	C-T	Hetero	INTERGENIC
SBS	Chr5	17614002	C-T	Homo	INTRON
SBS	Chr5	24080139	T-C	Hetero	INTERGENIC
SBS	Chr5	25841171	G-T	Hetero	INTERGENIC
SBS	Chr6	6742831	G-A	Homo	UTR_5_PRIME
SBS	Chr6	6742832	C-A	Homo	UTR_5_PRIME
SBS	Chr6	27126254	T-G	Hetero	INTERGENIC
SBS	Chr7	11227712	G-A	Hetero	INTERGENIC
SBS	Chr7	12886441	G-A	Hetero	INTERGENIC
SBS	Chr7	21180123	G-C	Hetero	INTERGENIC
SBS	Chr9	1303765	G-T	Hetero	INTERGENIC
SBS	Chr9	3143483	G-A	Hetero	INTERGENIC
SBS	Chr9	5102587	G-A	Hetero	INTERGENIC
SBS	Chr9	5896487	C-G	Hetero	UTR_3_PRIME
SBS	Chr9	12009825	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	4223288	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g032100
SBS	Chr12	7505832	C-A	Homo	INTERGENIC
SBS	Chr12	19838506	G-A	Homo	INTERGENIC
SBS	Chr12	19838507	C-A	Homo	INTERGENIC
SBS	Chr12	24140115	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1035654	1035656	2
Deletion	Chr7	2380167	2380172	5
Deletion	Chr4	2835049	2835053	4
Deletion	Chr7	4187117	4187119	2
Deletion	Chr11	4927378	4927382	4
Deletion	Chr3	7110908	7110910	2
Deletion	Chr5	9406557	9406561	4
Deletion	Chr12	11032430	11032433	3
Deletion	Chr8	13924848	13924849	1
Deletion	Chr3	19793187	19793188	1
Deletion	Chr2	21863402	21863406	4
Deletion	Chr11	22701449	22701453	4
Deletion	Chr12	23429830	23429834	4
Deletion	Chr2	30602361	30602363	2
Deletion	Chr1	40921456	40921461	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	5773855	5857627	OsKitaake09g033100
Inversion	Chr9	5773869	5857636	OsKitaake09g033100
Inversion	Chr5	7727738	8339117
Inversion	Chr5	7727752	8339116

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes