Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3331-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3331-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 29274243 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 29765483 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42006127 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 13119033 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 17629510 | C-G | Homo | INTERGENIC | |
| SBS | Chr2 | 19307408 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 28521824 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 31778251 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 31778253 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 33202565 | C-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr4 | 4690732 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17155039 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 3096478 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 3096479 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 22957576 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26415089 | C-G | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr7 | 7468207 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10099424 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21491067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12570123 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 27616268 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 10150274 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 13906172 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 471974 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16961675 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16961676 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 3436186 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12909160 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 15626043 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18325432 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 18325435 | G-C | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 2377001 | 2387000 | 9999 | 2 |
| Deletion | Chr6 | 4730559 | 4730560 | 1 | |
| Deletion | Chr3 | 5056440 | 5056451 | 11 | |
| Deletion | Chr9 | 8674656 | 8674657 | 1 | |
| Deletion | Chr4 | 9917149 | 9917152 | 3 | |
| Deletion | Chr9 | 10216908 | 10216922 | 14 | |
| Deletion | Chr12 | 11043357 | 11043360 | 3 | |
| Deletion | Chr1 | 12234941 | 12234942 | 1 | |
| Deletion | Chr10 | 13405001 | 13425000 | 19999 | 2 |
| Deletion | Chr3 | 15363001 | 15452000 | 88999 | 4 |
| Deletion | Chr3 | 15465001 | 15495000 | 29999 | |
| Deletion | Chr7 | 16587927 | 16587931 | 4 | |
| Deletion | Chr8 | 20627001 | 20670000 | 42999 | 8 |
| Deletion | Chr11 | 20937685 | 20937686 | 1 | |
| Deletion | Chr4 | 26946971 | 26946976 | 5 | |
| Deletion | Chr11 | 29063590 | 29063602 | 12 | OsKitaake11g238100 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 27133567 | 27133569 | 1 | |
| Insertion | Chr6 | 25298840 | 25298843 | 2 | |
| Insertion | Chr10 | 12089409 | 12089412 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 1284395 | 1422678 | OsKitaake11g015700 |
| Inversion | Chr11 | 1284408 | 1422679 | OsKitaake11g015700 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 11799583 | Chr7 | 12361253 | |
| Translocation | Chr8 | 20625456 | Chr3 | 15500453 | OsKitaake03g199700 |
| Translocation | Chr8 | 20669710 | Chr3 | 15327519 | OsKitaake08g154000 |
| Translocation | Chr5 | 21922985 | Chr4 | 12198034 | |
| Translocation | Chr5 | 21923295 | Chr4 | 12198031 |