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Mutant Information

Mutant Name	FN3332-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3332-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5198543 C-G Hetero INTERGENIC
SBS Chr1 6065337 C-T Hetero INTERGENIC
SBS Chr1 19200246 C-T Homo INTERGENIC
SBS Chr1 22364909 G-A Hetero INTERGENIC
SBS Chr1 28926420 G-A Homo INTERGENIC
SBS Chr1 32824200 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g333300
SBS Chr2 8173327 C-T Homo UTR_3_PRIME
SBS Chr2 16272355 G-A Homo INTERGENIC
SBS Chr2 17704811 G-A Homo INTERGENIC
SBS Chr3 19632377 G-T Homo INTERGENIC
SBS Chr3 23193921 T-A Homo INTERGENIC
SBS Chr3 23193922 G-T Homo INTERGENIC
SBS Chr3 28147618 T-A Hetero INTERGENIC
SBS Chr4 4934388 T-A Hetero INTERGENIC
SBS Chr4 4934390 C-A Hetero INTERGENIC
SBS Chr4 9843596 C-T Hetero INTERGENIC
SBS Chr4 23066794 G-C Hetero INTERGENIC
SBS Chr4 30090686 G-T Hetero INTERGENIC
SBS Chr4 31666141 C-T Hetero INTRON
SBS Chr4 32225229 C-T Hetero INTERGENIC
SBS Chr4 35881668 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake04g307500
SBS Chr5 25555195 G-A Hetero INTRON
SBS Chr6 1078233 G-T Hetero INTERGENIC
SBS Chr6 3048090 C-T Hetero INTERGENIC
SBS Chr6 12909884 C-A Homo INTRON
SBS Chr6 15849468 G-A Homo INTERGENIC
SBS Chr6 18769025 G-A Hetero INTERGENIC
SBS Chr6 19587120 G-A Hetero INTERGENIC
SBS Chr6 22689527 A-G Hetero INTERGENIC
SBS Chr6 30962349 A-T Hetero UTR_5_PRIME
SBS Chr7 6891365 A-C Hetero INTERGENIC
SBS Chr7 28268095 T-A Hetero INTRON
SBS Chr7 28268096 A-T Hetero INTRON
SBS Chr8 3809486 T-C Homo INTERGENIC
SBS Chr8 9967302 C-A Homo INTERGENIC
SBS Chr8 24783231 C-T Hetero INTERGENIC
SBS Chr8 25451441 C-T Hetero INTERGENIC
SBS Chr8 25813428 C-A Hetero INTERGENIC
SBS Chr8 25816268 A-C Hetero INTERGENIC
SBS Chr9 16748969 A-T Homo INTERGENIC
SBS Chr10 3090435 T-A Homo INTERGENIC
SBS Chr10 3212587 A-G Hetero INTERGENIC
SBS Chr11 12857605 G-A Hetero INTERGENIC
SBS Chr11 17344317 G-A Hetero INTERGENIC
SBS Chr11 19492859 C-T Hetero INTERGENIC
SBS Chr12 7985777 C-T Hetero INTERGENIC
SBS Chr12 9333676 C-T Hetero INTERGENIC
SBS Chr12 12934240 G-T Hetero INTERGENIC
SBS Chr12 12934241 G-T Hetero INTERGENIC
SBS Chr12 13085002 C-A Hetero INTERGENIC
SBS Chr12 24732040 G-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1371001 1379000 7999 OsKitaake05g017100
Deletion Chr3 6184614 6184622 8
Deletion Chr10 7227698 7227701 3
Deletion Chr11 8308001 8709000 400999 24
Deletion Chr11 8713001 9404000 690999 42
Deletion Chr8 9228357 9228358 1
Deletion Chr6 10039376 10039387 11
Deletion Chr7 11030136 11030161 25
Deletion Chr8 13745802 13745813 11
Deletion Chr10 13754986 13754987 1
Deletion Chr4 20711001 20724000 12999 3
Deletion Chr4 21453428 21453434 6
Deletion Chr4 21511001 21590000 78999 9
Deletion Chr11 21712749 21712750 1
Deletion Chr12 22979724 22979725 1
Deletion Chr2 23348001 23378000 29999 6
Deletion Chr4 29349081 29349082 1 OsKitaake04g223500

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 36935587 36935595 7
Insertion Chr7 7942441 7942444 2
Insertion Chr10 16178796 16178799 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 10584537 11099897 2
Inversion Chr6 10584545 11099900 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 798248 Chr10 23920692 2
Translocation Chr11 798256 Chr4 21592233 2
Translocation Chr11 8315196 Chr10 2996735 OsKitaake10g024600
Translocation Chr11 8315520 Chr10 3458870 OsKitaake10g026100
Translocation Chr11 9404522 Chr7 28269085 OsKitaake07g267300
Translocation Chr11 9407007 Chr7 28269083 2
Translocation Chr10 23920726 Chr4 21591325 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5198543	C-G	Hetero	INTERGENIC
SBS	Chr1	6065337	C-T	Hetero	INTERGENIC
SBS	Chr1	19200246	C-T	Homo	INTERGENIC
SBS	Chr1	22364909	G-A	Hetero	INTERGENIC
SBS	Chr1	28926420	G-A	Homo	INTERGENIC
SBS	Chr1	32824200	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g333300
SBS	Chr2	8173327	C-T	Homo	UTR_3_PRIME
SBS	Chr2	16272355	G-A	Homo	INTERGENIC
SBS	Chr2	17704811	G-A	Homo	INTERGENIC
SBS	Chr3	19632377	G-T	Homo	INTERGENIC
SBS	Chr3	23193921	T-A	Homo	INTERGENIC
SBS	Chr3	23193922	G-T	Homo	INTERGENIC
SBS	Chr3	28147618	T-A	Hetero	INTERGENIC
SBS	Chr4	4934388	T-A	Hetero	INTERGENIC
SBS	Chr4	4934390	C-A	Hetero	INTERGENIC
SBS	Chr4	9843596	C-T	Hetero	INTERGENIC
SBS	Chr4	23066794	G-C	Hetero	INTERGENIC
SBS	Chr4	30090686	G-T	Hetero	INTERGENIC
SBS	Chr4	31666141	C-T	Hetero	INTRON
SBS	Chr4	32225229	C-T	Hetero	INTERGENIC
SBS	Chr4	35881668	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g307500
SBS	Chr5	25555195	G-A	Hetero	INTRON
SBS	Chr6	1078233	G-T	Hetero	INTERGENIC
SBS	Chr6	3048090	C-T	Hetero	INTERGENIC
SBS	Chr6	12909884	C-A	Homo	INTRON
SBS	Chr6	15849468	G-A	Homo	INTERGENIC
SBS	Chr6	18769025	G-A	Hetero	INTERGENIC
SBS	Chr6	19587120	G-A	Hetero	INTERGENIC
SBS	Chr6	22689527	A-G	Hetero	INTERGENIC
SBS	Chr6	30962349	A-T	Hetero	UTR_5_PRIME
SBS	Chr7	6891365	A-C	Hetero	INTERGENIC
SBS	Chr7	28268095	T-A	Hetero	INTRON
SBS	Chr7	28268096	A-T	Hetero	INTRON
SBS	Chr8	3809486	T-C	Homo	INTERGENIC
SBS	Chr8	9967302	C-A	Homo	INTERGENIC
SBS	Chr8	24783231	C-T	Hetero	INTERGENIC
SBS	Chr8	25451441	C-T	Hetero	INTERGENIC
SBS	Chr8	25813428	C-A	Hetero	INTERGENIC
SBS	Chr8	25816268	A-C	Hetero	INTERGENIC
SBS	Chr9	16748969	A-T	Homo	INTERGENIC
SBS	Chr10	3090435	T-A	Homo	INTERGENIC
SBS	Chr10	3212587	A-G	Hetero	INTERGENIC
SBS	Chr11	12857605	G-A	Hetero	INTERGENIC
SBS	Chr11	17344317	G-A	Hetero	INTERGENIC
SBS	Chr11	19492859	C-T	Hetero	INTERGENIC
SBS	Chr12	7985777	C-T	Hetero	INTERGENIC
SBS	Chr12	9333676	C-T	Hetero	INTERGENIC
SBS	Chr12	12934240	G-T	Hetero	INTERGENIC
SBS	Chr12	12934241	G-T	Hetero	INTERGENIC
SBS	Chr12	13085002	C-A	Hetero	INTERGENIC
SBS	Chr12	24732040	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1371001	1379000	7999	OsKitaake05g017100
Deletion	Chr3	6184614	6184622	8
Deletion	Chr10	7227698	7227701	3
Deletion	Chr11	8308001	8709000	400999	24
Deletion	Chr11	8713001	9404000	690999	42
Deletion	Chr8	9228357	9228358	1
Deletion	Chr6	10039376	10039387	11
Deletion	Chr7	11030136	11030161	25
Deletion	Chr8	13745802	13745813	11
Deletion	Chr10	13754986	13754987	1
Deletion	Chr4	20711001	20724000	12999	3
Deletion	Chr4	21453428	21453434	6
Deletion	Chr4	21511001	21590000	78999	9
Deletion	Chr11	21712749	21712750	1
Deletion	Chr12	22979724	22979725	1
Deletion	Chr2	23348001	23378000	29999	6
Deletion	Chr4	29349081	29349082	1	OsKitaake04g223500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	10584537	11099897	2
Inversion	Chr6	10584545	11099900	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes